Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZV entry

There is 1 chain in PDB entry 1VZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11HIS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1VZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA
A
33 39Right-handed alpha
Helix 2
A1
A
80 89Right-handed alpha
Helix 3
A2
A
97 100Right-handed alpha
Helix 4
A3
A
106 115Right-handed alpha
Helix 5
A4
A
159 162Right-handed alpha
Helix 6
A5
A
171 183Right-handed alpha
Helix 7
A6
A
195 207Right-handed alpha
Helix 8
A7
A
215 226Right-handed alpha
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There is 1 sheet (COR) in PDB entry 1VZV.

There are 8 strands in COR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
56 67anti-parallel
Strand 4
A
47 50anti-parallel
Strand 5
A
138 144parallel
Strand 6
A
118 123anti-parallel
Strand 7
A
151 157anti-parallel
Strand 8
A
12 19anti-parallel
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