Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZY entry

There are 2 chains in PDB entry 1VZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 290
B
 MET 1ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1VZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
35 54Right-handed alpha
Helix 3
3
A
105 111Right-handed alpha
Helix 4
4
A
139 152Right-handed alpha
Helix 5
5
A
184 196Right-handed alpha
Helix 6
6
A
200 208Right-handed alpha
Helix 7
7
A
210 220Right-handed alpha
Helix 8
8
A
238 248Right-handed alpha
Helix 9
9
A
250 262Right-handed alpha
Helix 10
10
A
279 289Right-handed alpha
Helix 11
11
B
21 33Right-handed alpha
Helix 12
12
B
35 54Right-handed alpha
Helix 13
13
B
105 111Right-handed alpha
Helix 14
14
B
139 150Right-handed alpha
Helix 15
15
B
186 198Right-handed alpha
Helix 16
16
B
200 207Right-handed alpha
Helix 17
17
B
210 220Right-handed alpha
Helix 18
18
B
238 248Right-handed alpha
Helix 19
19
B
251 260Right-handed alpha
Helix 20
20
B
279 284Right-handed alpha
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There are 5 sheets in PDB entry 1VZY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 163first strand
Strand 2
A
169 179anti-parallel
Strand 3
A
14 20anti-parallel
Strand 4
A
3 9anti-parallel
Strand 5
A
224 230anti-parallel
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There are 12 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
84 89parallel
Strand 3
A
74 80anti-parallel
Strand 4
A
61 67anti-parallel
Strand 5
A
115 121anti-parallel
Strand 6
A
126 133anti-parallel
Strand 7
B
126 133anti-parallel
Strand 8
B
115 123anti-parallel
Strand 9
B
61 67anti-parallel
Strand 10
B
75 80anti-parallel
Strand 11
B
84 89anti-parallel
Strand 12
B
232 233parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
274 278anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 163first strand
Strand 2
B
169 179anti-parallel
Strand 3
B
14 20anti-parallel
Strand 4
B
3 9anti-parallel
Strand 5
B
224 230anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 267first strand
Strand 2
B
274 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il