Analysis of interatomic Contacts of Structural Units in PDB entry:
1W07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W07 entry

There are 2 chains in PDB entry 1W07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 659
B
 GLU 2LEU 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 1W07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
17 27Right-handed alpha
Helix 3
3
A
28 44Right-handed alpha
Helix 4
4
A
45 49Right-handed 310
Helix 5
5
A
57 79Right-handed alpha
Helix 6
6
A
82 94Right-handed alpha
Helix 7
7
A
97 105Right-handed alpha
Helix 8
8
A
105 114Right-handed alpha
Helix 9
9
A
115 128Right-handed alpha
Helix 10
10
A
145 149Right-handed 310
Helix 11
11
A
168 172Right-handed 310
Helix 12
12
A
232 237Right-handed 310
Helix 13
13
A
273 277Right-handed 310
Helix 14
14
A
282 310Right-handed alpha
Helix 15
15
A
324 326Right-handed 310
Helix 16
16
A
327 362Right-handed alpha
Helix 17
17
A
369 398Right-handed alpha
Helix 18
18
A
399 404Right-handed 310
Helix 19
19
A
406 408Right-handed 310
Helix 20
20
A
409 418Right-handed alpha
Helix 21
21
A
419 422Right-handed 310
Helix 22
22
A
426 443Right-handed alpha
Helix 23
23
A
452 459Right-handed 310
Helix 24
24
A
460 465Right-handed alpha
Helix 25
25
A
473 478Right-handed 310
Helix 26
26
A
479 503Right-handed alpha
Helix 27
27
A
507 515Right-handed alpha
Helix 28
28
A
515 539Right-handed alpha
Helix 29
29
A
547 567Right-handed alpha
Helix 30
30
A
567 574Right-handed alpha
Helix 31
31
A
578 597Right-handed alpha
Helix 32
32
A
599 606Right-handed alpha
Helix 33
33
A
610 615Right-handed alpha
Helix 34
34
A
625 636Right-handed alpha
Helix 35
35
A
637 641Right-handed 310
Helix 36
36
A
646 651Right-handed alpha
Helix 37
37
A
651 656Right-handed alpha
Helix 38
38
B
7 13Right-handed alpha
Helix 39
39
B
17 27Right-handed alpha
Helix 40
40
B
28 44Right-handed alpha
Helix 41
41
B
45 49Right-handed 310
Helix 42
42
B
52 56Right-handed 310
Helix 43
43
B
57 79Right-handed alpha
Helix 44
44
B
82 94Right-handed alpha
Helix 45
45
B
97 105Right-handed alpha
Helix 46
46
B
105 114Right-handed alpha
Helix 47
47
B
115 128Right-handed alpha
Helix 48
48
B
145 149Right-handed 310
Helix 49
49
B
168 172Right-handed 310
Helix 50
50
B
232 237Right-handed 310
Helix 51
51
B
277 310Right-handed alpha
Helix 52
52
B
324 326Right-handed 310
Helix 53
53
B
327 364Right-handed alpha
Helix 54
54
B
369 399Right-handed alpha
Helix 55
55
B
400 404Right-handed 310
Helix 56
56
B
406 408Right-handed 310
Helix 57
57
B
409 418Right-handed alpha
Helix 58
58
B
419 422Right-handed 310
Helix 59
59
B
426 444Right-handed alpha
Helix 60
60
B
452 459Right-handed 310
Helix 61
61
B
460 465Right-handed alpha
Helix 62
62
B
473 478Right-handed 310
Helix 63
63
B
479 504Right-handed alpha
Helix 64
64
B
507 515Right-handed alpha
Helix 65
65
B
515 539Right-handed alpha
Helix 66
66
B
547 567Right-handed alpha
Helix 67
67
B
567 573Right-handed alpha
Helix 68
68
B
578 597Right-handed alpha
Helix 69
69
B
599 606Right-handed alpha
Helix 70
70
B
610 615Right-handed alpha
Helix 71
71
B
624 636Right-handed alpha
Helix 72
72
B
637 641Right-handed 310
Helix 73
73
B
646 651Right-handed alpha
Helix 74
74
B
651 656Right-handed alpha
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There are 8 sheets in PDB entry 1W07. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
185 194parallel
Strand 3
A
152 155parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
247 250anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
185 194parallel
Strand 3
A
197 207anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
220 224anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
267 269anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
185 194parallel
Strand 3
B
152 155parallel
Strand 4
B
161 165anti-parallel
Strand 5
B
247 250anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
185 194parallel
Strand 3
B
197 207anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
220 224anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il