Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1W0C entry

There are 8 chains in PDB entry 1W0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	ALA 288
B	THR 5	ALA 288
C	THR 5	ALA 288
D	THR 5	ALA 288
E	VAL 6	ALA 288
F	THR 5	ALA 288
G	VAL 6	ALA 288
H	THR 5	ALA 288

There are 90 helices in PDB entry 1W0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	29	Right-handed alpha
Helix 2	2	A	40	55	Right-handed alpha
Helix 3	3	A	84	101	Right-handed alpha
Helix 4	4	A	133	148	Right-handed alpha
Helix 5	5	A	148	164	Right-handed alpha
Helix 6	6	A	166	170	Right-handed 310
Helix 7	7	A	191	213	Right-handed alpha
Helix 8	8	A	234	243	Right-handed alpha
Helix 9	9	A	253	266	Right-handed alpha
Helix 10	10	A	267	270	Right-handed 310
Helix 11	11	A	282	286	Right-handed 310
Helix 12	12	B	16	29	Right-handed alpha
Helix 13	13	B	40	55	Right-handed alpha
Helix 14	14	B	84	101	Right-handed alpha
Helix 15	15	B	133	148	Right-handed alpha
Helix 16	16	B	148	164	Right-handed alpha
Helix 17	17	B	166	170	Right-handed 310
Helix 18	18	B	191	213	Right-handed alpha
Helix 19	19	B	234	243	Right-handed alpha
Helix 20	20	B	253	266	Right-handed alpha
Helix 21	21	B	267	270	Right-handed 310
Helix 22	22	B	282	286	Right-handed 310
Helix 23	23	C	16	29	Right-handed alpha
Helix 24	24	C	40	55	Right-handed alpha
Helix 25	25	C	84	101	Right-handed alpha
Helix 26	26	C	133	148	Right-handed alpha
Helix 27	27	C	148	165	Right-handed alpha
Helix 28	28	C	166	170	Right-handed 310
Helix 29	29	C	191	213	Right-handed alpha
Helix 30	30	C	214	216	Right-handed 310
Helix 31	31	C	241	245	Right-handed 310
Helix 32	32	C	253	266	Right-handed alpha
Helix 33	33	C	267	270	Right-handed 310
Helix 34	34	C	282	286	Right-handed 310
Helix 35	35	D	16	29	Right-handed alpha
Helix 36	36	D	40	55	Right-handed alpha
Helix 37	37	D	84	101	Right-handed alpha
Helix 38	38	D	136	148	Right-handed alpha
Helix 39	39	D	148	165	Right-handed alpha
Helix 40	40	D	166	170	Right-handed 310
Helix 41	41	D	191	213	Right-handed alpha
Helix 42	42	D	214	216	Right-handed 310
Helix 43	43	D	240	245	Right-handed 310
Helix 44	44	D	253	266	Right-handed alpha
Helix 45	45	D	267	270	Right-handed 310
Helix 46	46	D	282	286	Right-handed 310
Helix 47	47	E	16	29	Right-handed alpha
Helix 48	48	E	40	55	Right-handed alpha
Helix 49	49	E	84	101	Right-handed alpha
Helix 50	50	E	131	148	Right-handed alpha
Helix 51	51	E	148	164	Right-handed alpha
Helix 52	52	E	166	170	Right-handed 310
Helix 53	53	E	191	213	Right-handed alpha
Helix 54	54	E	234	243	Right-handed alpha
Helix 55	55	E	253	266	Right-handed alpha
Helix 56	56	E	267	270	Right-handed 310
Helix 57	57	E	282	286	Right-handed 310
Helix 58	58	F	16	29	Right-handed alpha
Helix 59	59	F	40	55	Right-handed alpha
Helix 60	60	F	84	101	Right-handed alpha
Helix 61	61	F	132	148	Right-handed alpha
Helix 62	62	F	148	164	Right-handed alpha
Helix 63	63	F	166	170	Right-handed 310
Helix 64	64	F	191	213	Right-handed alpha
Helix 65	65	F	234	243	Right-handed alpha
Helix 66	66	F	253	266	Right-handed alpha
Helix 67	67	F	267	270	Right-handed 310
Helix 68	68	F	282	286	Right-handed 310
Helix 69	69	G	16	29	Right-handed alpha
Helix 70	70	G	40	55	Right-handed alpha
Helix 71	71	G	84	101	Right-handed alpha
Helix 72	72	G	134	148	Right-handed alpha
Helix 73	73	G	148	165	Right-handed alpha
Helix 74	74	G	166	170	Right-handed 310
Helix 75	75	G	191	213	Right-handed alpha
Helix 76	76	G	214	216	Right-handed 310
Helix 77	77	G	241	245	Right-handed 310
Helix 78	78	G	253	266	Right-handed alpha
Helix 79	79	G	267	270	Right-handed 310
Helix 80	80	G	282	286	Right-handed 310
Helix 81	81	H	16	29	Right-handed alpha
Helix 82	82	H	40	55	Right-handed alpha
Helix 83	83	H	84	101	Right-handed alpha
Helix 84	84	H	134	148	Right-handed alpha
Helix 85	85	H	148	165	Right-handed alpha
Helix 86	86	H	166	170	Right-handed 310
Helix 87	87	H	191	213	Right-handed alpha
Helix 88	88	H	253	266	Right-handed alpha
Helix 89	89	H	267	270	Right-handed 310
Helix 90	90	H	282	286	Right-handed 310

There are 8 sheets in PDB entry 1W0C. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	32	37	parallel
Strand 3	A	8	11	parallel
Strand 4	A	105	108	parallel
Strand 5	A	174	179	parallel
Strand 6	A	217	224	parallel
Strand 7	A	276	279	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	32	37	parallel
Strand 3	B	8	11	parallel
Strand 4	B	105	108	parallel
Strand 5	B	174	179	parallel
Strand 6	B	217	224	parallel
Strand 7	B	276	279	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	32	37	parallel
Strand 3	C	8	11	parallel
Strand 4	C	105	108	parallel
Strand 5	C	175	179	parallel
Strand 6	C	218	224	parallel
Strand 7	C	276	279	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	32	37	parallel
Strand 3	D	8	11	parallel
Strand 4	D	105	108	parallel
Strand 5	D	175	179	parallel
Strand 6	D	218	224	parallel
Strand 7	D	276	279	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	32	37	parallel
Strand 3	E	8	11	parallel
Strand 4	E	105	108	parallel
Strand 5	E	174	179	parallel
Strand 6	E	217	224	parallel
Strand 7	E	276	279	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	63	first strand
Strand 2	F	32	37	parallel
Strand 3	F	8	11	parallel
Strand 4	F	105	108	parallel
Strand 5	F	174	179	parallel
Strand 6	F	217	224	parallel
Strand 7	F	276	279	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	32	37	parallel
Strand 3	G	8	11	parallel
Strand 4	G	105	108	parallel
Strand 5	G	175	179	parallel
Strand 6	G	218	224	parallel
Strand 7	G	276	279	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	63	first strand
Strand 2	H	32	37	parallel
Strand 3	H	8	11	parallel
Strand 4	H	105	108	parallel
Strand 5	H	174	179	parallel
Strand 6	H	217	224	parallel
Strand 7	H	276	279	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1W0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0C