Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1W0D entry

There are 4 chains in PDB entry 1W0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 336
B	MET 1	LEU 336
C	MET 1	LEU 336
D	MET 1	LEU 336

There are 63 helices in PDB entry 1W0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	27	Right-handed alpha
Helix 2	2	A	38	46	Right-handed alpha
Helix 3	3	A	50	58	Right-handed alpha
Helix 4	4	A	76	82	Right-handed alpha
Helix 5	5	A	82	90	Right-handed alpha
Helix 6	6	A	126	130	Right-handed 310
Helix 7	7	A	152	169	Right-handed alpha
Helix 8	8	A	182	198	Right-handed alpha
Helix 9	9	A	210	220	Right-handed alpha
Helix 10	10	A	221	224	Right-handed 310
Helix 11	11	A	230	245	Right-handed alpha
Helix 12	12	A	247	250	Right-handed 310
Helix 13	13	A	273	277	Right-handed 310
Helix 14	14	A	284	298	Right-handed alpha
Helix 15	15	A	300	318	Right-handed alpha
Helix 16	16	A	324	335	Right-handed alpha
Helix 17	17	B	11	27	Right-handed alpha
Helix 18	18	B	38	46	Right-handed alpha
Helix 19	19	B	50	59	Right-handed alpha
Helix 20	20	B	76	82	Right-handed alpha
Helix 21	21	B	82	90	Right-handed alpha
Helix 22	22	B	126	130	Right-handed 310
Helix 23	23	B	152	169	Right-handed alpha
Helix 24	24	B	182	198	Right-handed alpha
Helix 25	25	B	210	220	Right-handed alpha
Helix 26	26	B	221	224	Right-handed 310
Helix 27	27	B	230	245	Right-handed alpha
Helix 28	28	B	247	250	Right-handed 310
Helix 29	29	B	273	277	Right-handed 310
Helix 30	30	B	284	298	Right-handed alpha
Helix 31	31	B	300	318	Right-handed alpha
Helix 32	32	B	324	334	Right-handed alpha
Helix 33	33	C	11	27	Right-handed alpha
Helix 34	34	C	38	44	Right-handed alpha
Helix 35	35	C	50	59	Right-handed alpha
Helix 36	36	C	76	82	Right-handed alpha
Helix 37	37	C	82	91	Right-handed alpha
Helix 38	38	C	127	129	Right-handed 310
Helix 39	39	C	152	168	Right-handed alpha
Helix 40	40	C	182	198	Right-handed alpha
Helix 41	41	C	210	220	Right-handed alpha
Helix 42	42	C	221	224	Right-handed 310
Helix 43	43	C	230	245	Right-handed alpha
Helix 44	44	C	247	250	Right-handed 310
Helix 45	45	C	273	277	Right-handed 310
Helix 46	46	C	284	298	Right-handed alpha
Helix 47	47	C	300	318	Right-handed alpha
Helix 48	48	C	324	335	Right-handed alpha
Helix 49	49	D	11	27	Right-handed alpha
Helix 50	50	D	38	45	Right-handed alpha
Helix 51	51	D	50	58	Right-handed alpha
Helix 52	52	D	76	82	Right-handed alpha
Helix 53	53	D	82	90	Right-handed alpha
Helix 54	54	D	152	168	Right-handed alpha
Helix 55	55	D	182	198	Right-handed alpha
Helix 56	56	D	210	220	Right-handed alpha
Helix 57	57	D	221	224	Right-handed 310
Helix 58	58	D	230	245	Right-handed alpha
Helix 59	59	D	247	250	Right-handed 310
Helix 60	60	D	273	277	Right-handed 310
Helix 61	61	D	284	298	Right-handed alpha
Helix 62	62	D	300	318	Right-handed alpha
Helix 63	63	D	324	335	Right-handed alpha

There are 6 sheets in PDB entry 1W0D. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, DA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	2	8	parallel
Strand 3	A	62	67	parallel
Strand 4	A	264	268	parallel
Strand 5	A	252	256	anti-parallel
Strand 6	A	94	100	anti-parallel
Strand 7	A	116	122	anti-parallel
Strand 8	A	226	229	parallel
Strand 9	A	172	177	parallel
Strand 10	A	204	209	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	143	151	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	132	135	anti-parallel

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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	2	8	parallel
Strand 3	B	62	67	parallel
Strand 4	B	264	268	parallel
Strand 5	B	252	256	anti-parallel
Strand 6	B	94	100	anti-parallel
Strand 7	B	116	122	anti-parallel
Strand 8	B	226	229	parallel
Strand 9	B	172	177	parallel
Strand 10	B	204	209	parallel

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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	2	8	parallel
Strand 3	C	62	67	parallel
Strand 4	C	264	268	parallel
Strand 5	C	252	256	anti-parallel
Strand 6	C	94	100	anti-parallel
Strand 7	C	116	122	anti-parallel
Strand 8	C	226	229	parallel
Strand 9	C	172	177	parallel
Strand 10	C	204	209	parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	132	135	anti-parallel

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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	2	8	parallel
Strand 3	D	62	67	parallel
Strand 4	D	264	268	parallel
Strand 5	D	252	256	anti-parallel
Strand 6	D	94	100	anti-parallel
Strand 7	D	116	122	anti-parallel
Strand 8	D	226	229	parallel
Strand 9	D	172	177	parallel
Strand 10	D	204	209	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1W0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0D