Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1W0J entry

There are 7 chains in PDB entry 1W0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 24	ALA 510
B	VAL 23	ALA 510
C	GLU 13	ALA 510
D	THR 9	GLU 475
E	THR 9	ALA 474
F	THR 9	ALA 474
G	ALA 1	LEU 272

There are138 helices in PDB entry 1W0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	78	82	Right-handed 310
Helix 2	2	A	100	104	Right-handed 310
Helix 3	3	A	150	157	Right-handed alpha
Helix 4	4	A	174	186	Right-handed alpha
Helix 5	5	A	186	191	Right-handed alpha
Helix 6	6	A	194	198	Right-handed 310
Helix 7	7	A	209	223	Right-handed alpha
Helix 8	8	A	225	227	Right-handed 310
Helix 9	9	A	239	259	Right-handed alpha
Helix 10	10	A	270	285	Right-handed alpha
Helix 11	11	A	290	294	Right-handed 310
Helix 12	12	A	297	308	Right-handed alpha
Helix 13	13	A	313	317	Right-handed 310
Helix 14	14	A	336	346	Right-handed alpha
Helix 15	15	A	353	359	Right-handed alpha
Helix 16	16	A	374	379	Right-handed 310
Helix 17	17	A	380	399	Right-handed alpha
Helix 18	18	A	411	429	Right-handed alpha
Helix 19	19	A	437	450	Right-handed alpha
Helix 20	20	A	457	459	Right-handed 310
Helix 21	21	A	460	476	Right-handed alpha
Helix 22	22	A	476	486	Right-handed alpha
Helix 23	23	A	490	509	Right-handed alpha
Helix 24	24	B	78	82	Right-handed 310
Helix 25	25	B	100	104	Right-handed 310
Helix 26	26	B	150	157	Right-handed alpha
Helix 27	27	B	174	186	Right-handed alpha
Helix 28	28	B	186	191	Right-handed alpha
Helix 29	29	B	209	223	Right-handed alpha
Helix 30	30	B	225	227	Right-handed 310
Helix 31	31	B	239	259	Right-handed alpha
Helix 32	32	B	270	285	Right-handed alpha
Helix 33	33	B	290	294	Right-handed 310
Helix 34	34	B	297	307	Right-handed alpha
Helix 35	35	B	313	317	Right-handed 310
Helix 36	36	B	336	344	Right-handed alpha
Helix 37	37	B	353	359	Right-handed alpha
Helix 38	38	B	374	379	Right-handed 310
Helix 39	39	B	380	399	Right-handed alpha
Helix 40	40	B	411	428	Right-handed alpha
Helix 41	41	B	437	450	Right-handed alpha
Helix 42	42	B	457	459	Right-handed 310
Helix 43	43	B	460	476	Right-handed alpha
Helix 44	44	B	476	487	Right-handed alpha
Helix 45	45	B	490	508	Right-handed alpha
Helix 46	46	C	78	82	Right-handed 310
Helix 47	47	C	100	104	Right-handed 310
Helix 48	48	C	150	157	Right-handed alpha
Helix 49	49	C	174	186	Right-handed alpha
Helix 50	50	C	186	191	Right-handed alpha
Helix 51	51	C	209	223	Right-handed alpha
Helix 52	52	C	225	227	Right-handed 310
Helix 53	53	C	239	259	Right-handed alpha
Helix 54	54	C	270	285	Right-handed alpha
Helix 55	55	C	290	294	Right-handed 310
Helix 56	56	C	297	307	Right-handed alpha
Helix 57	57	C	313	317	Right-handed 310
Helix 58	58	C	336	344	Right-handed alpha
Helix 59	59	C	353	360	Right-handed alpha
Helix 60	60	C	374	379	Right-handed 310
Helix 61	61	C	380	388	Right-handed alpha
Helix 62	62	C	389	405	Right-handed alpha
Helix 63	63	C	411	428	Right-handed alpha
Helix 64	64	C	437	450	Right-handed alpha
Helix 65	65	C	457	459	Right-handed 310
Helix 66	66	C	460	476	Right-handed alpha
Helix 67	67	C	476	487	Right-handed alpha
Helix 68	68	C	490	509	Right-handed alpha
Helix 69	69	D	87	91	Right-handed 310
Helix 70	70	D	122	126	Right-handed 310
Helix 71	71	D	137	144	Right-handed alpha
Helix 72	72	D	161	174	Right-handed alpha
Helix 73	73	D	189	203	Right-handed alpha
Helix 74	74	D	225	247	Right-handed alpha
Helix 75	75	D	258	270	Right-handed alpha
Helix 76	76	D	271	273	Right-handed 310
Helix 77	77	D	277	281	Right-handed 310
Helix 78	78	D	284	294	Right-handed alpha
Helix 79	79	D	313	316	Right-handed 310
Helix 80	80	D	319	326	Right-handed alpha
Helix 81	81	D	327	329	Right-handed 310
Helix 82	82	D	336	341	Right-handed alpha
Helix 83	83	D	359	364	Right-handed alpha
Helix 84	84	D	364	392	Right-handed alpha
Helix 85	85	D	399	414	Right-handed alpha
Helix 86	86	D	418	420	Right-handed 310
Helix 87	87	D	421	426	Right-handed alpha
Helix 88	88	D	433	446	Right-handed alpha
Helix 89	89	D	453	458	Right-handed 310
Helix 90	90	D	463	475	Right-handed alpha
Helix 91	91	E	87	91	Right-handed 310
Helix 92	92	E	122	125	Right-handed 310
Helix 93	93	E	137	144	Right-handed alpha
Helix 94	94	E	161	177	Right-handed alpha
Helix 95	95	E	189	204	Right-handed alpha
Helix 96	96	E	225	246	Right-handed alpha
Helix 97	97	E	257	272	Right-handed alpha
Helix 98	98	E	277	281	Right-handed 310
Helix 99	99	E	284	294	Right-handed alpha
Helix 100	100	E	312	316	Right-handed 310
Helix 101	101	E	319	327	Right-handed alpha
Helix 102	102	E	336	342	Right-handed alpha
Helix 103	103	E	364	384	Right-handed alpha
Helix 104	104	E	387	392	Right-handed alpha
Helix 105	105	E	397	414	Right-handed alpha
Helix 106	106	E	421	426	Right-handed alpha
Helix 107	107	E	433	447	Right-handed alpha
Helix 108	108	E	453	457	Right-handed 310
Helix 109	109	E	463	472	Right-handed alpha
Helix 110	110	F	87	90	Right-handed 310
Helix 111	111	F	122	126	Right-handed 310
Helix 112	112	F	137	144	Right-handed alpha
Helix 113	113	F	161	173	Right-handed alpha
Helix 114	114	F	189	203	Right-handed alpha
Helix 115	115	F	225	246	Right-handed alpha
Helix 116	116	F	258	270	Right-handed alpha
Helix 117	117	F	277	281	Right-handed 310
Helix 118	118	F	284	294	Right-handed alpha
Helix 119	119	F	313	316	Right-handed 310
Helix 120	120	F	319	326	Right-handed alpha
Helix 121	121	F	327	329	Right-handed 310
Helix 122	122	F	336	342	Right-handed alpha
Helix 123	123	F	359	364	Right-handed alpha
Helix 124	124	F	364	392	Right-handed alpha
Helix 125	125	F	393	396	Right-handed 310
Helix 126	126	F	397	414	Right-handed alpha
Helix 127	127	F	418	420	Right-handed 310
Helix 128	128	F	421	426	Right-handed alpha
Helix 129	129	F	433	446	Right-handed alpha
Helix 130	130	F	453	458	Right-handed 310
Helix 131	131	F	462	473	Right-handed alpha
Helix 132	132	G	2	37	Right-handed alpha
Helix 133	133	G	38	41	Right-handed 310
Helix 134	134	G	42	47	Right-handed alpha
Helix 135	135	G	81	88	Right-handed alpha
Helix 136	136	G	109	116	Right-handed alpha
Helix 137	137	G	137	147	Right-handed alpha
Helix 138	138	G	204	272	Right-handed alpha

There are 21 sheets in PDB entry 1W0J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	87	89	anti-parallel
Strand 3	A	52	55	anti-parallel
Strand 4	A	60	67	anti-parallel
Strand 5	E	10	17	anti-parallel
Strand 6	E	20	25	parallel
Strand 7	E	57	62	parallel
Strand 8	E	46	54	anti-parallel
Strand 9	E	35	38	anti-parallel
Strand 10	E	74	77	anti-parallel
Strand 11	E	10	17	parallel
Strand 12	A	60	67	anti-parallel
Strand 13	A	52	55	anti-parallel
Strand 14	A	28	35	first strand

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 11 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	229	234	parallel
Strand 3	A	200	206	parallel
Strand 4	A	263	269	parallel
Strand 5	A	320	328	parallel
Strand 6	A	310	311	anti-parallel
Strand 7	A	320	328	anti-parallel
Strand 8	A	371	372	first strand
Strand 9	A	348	351	anti-parallel
Strand 10	A	165	169	parallel
Strand 11	A	320	328	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	159	160	anti-parallel

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There are 28 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	F	10	17	anti-parallel
Strand 6	F	20	25	parallel
Strand 7	B	38	43	first strand
Strand 8	B	28	33	anti-parallel
Strand 9	B	51	55	first strand
Strand 10	B	87	94	anti-parallel
Strand 11	B	60	66	first strand
Strand 12	B	51	55	anti-parallel
Strand 13	B	71	75	first strand
Strand 14	B	38	43	anti-parallel
Strand 15	B	87	94	first strand
Strand 16	B	28	33	anti-parallel
Strand 17	F	10	17	first strand
Strand 18	B	60	66	anti-parallel
Strand 19	F	20	25	first strand
Strand 20	F	10	17	anti-parallel
Strand 21	F	35	38	first strand
Strand 22	F	46	54	anti-parallel
Strand 23	F	46	54	first strand
Strand 24	F	35	38	anti-parallel
Strand 25	F	57	62	first strand
Strand 26	F	20	25	parallel
Strand 27	F	74	77	first strand
Strand 28	F	10	17	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	229	234	parallel
Strand 3	B	200	206	parallel
Strand 4	B	263	269	parallel
Strand 5	B	320	328	parallel
Strand 6	B	166	169	parallel
Strand 7	B	348	352	parallel
Strand 8	B	371	372	anti-parallel

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There are 24 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	87	94	anti-parallel
Strand 3	C	38	43	first strand
Strand 4	C	28	35	anti-parallel
Strand 5	C	51	55	first strand
Strand 6	C	87	94	anti-parallel
Strand 7	C	60	66	first strand
Strand 8	C	51	55	anti-parallel
Strand 9	C	71	75	first strand
Strand 10	C	38	43	anti-parallel
Strand 11	C	87	94	first strand
Strand 12	C	28	35	anti-parallel
Strand 13	D	10	17	first strand
Strand 14	C	60	66	anti-parallel
Strand 15	D	20	25	first strand
Strand 16	D	10	17	anti-parallel
Strand 17	D	35	38	first strand
Strand 18	D	46	54	anti-parallel
Strand 19	D	46	54	first strand
Strand 20	D	35	38	anti-parallel
Strand 21	D	57	62	first strand
Strand 22	D	20	25	parallel
Strand 23	D	74	77	first strand
Strand 24	D	10	17	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 8 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	229	234	parallel
Strand 3	C	200	206	parallel
Strand 4	C	263	269	parallel
Strand 5	C	320	328	parallel
Strand 6	C	166	169	parallel
Strand 7	C	348	352	parallel
Strand 8	C	371	372	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	113	115	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	215	220	parallel
Strand 3	D	180	186	parallel
Strand 4	D	250	256	parallel
Strand 5	D	303	311	parallel
Strand 6	D	151	156	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	146	147	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	113	115	anti-parallel

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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	215	221	parallel
Strand 3	E	181	188	parallel
Strand 4	E	250	256	parallel
Strand 5	E	303	309	parallel
Strand 6	E	151	155	parallel
Strand 7	E	331	334	parallel
Strand 8	E	354	355	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	146	147	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	86	first strand
Strand 2	F	112	115	anti-parallel

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There are 8 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	215	220	parallel
Strand 3	F	181	186	parallel
Strand 4	F	250	256	parallel
Strand 5	F	303	311	parallel
Strand 6	F	151	156	parallel
Strand 7	F	331	334	parallel
Strand 8	F	354	355	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	133	first strand
Strand 2	F	146	147	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	108	first strand
Strand 2	G	69	71	parallel
Strand 3	G	160	161	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	165	first strand
Strand 2	G	171	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1W0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1W0J