Analysis of interatomic Contacts of Structural Units in PDB entry:
1W5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W5D entry

There is 1 chain in PDB entry 1W5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5GLN 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1W5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
19 22Right-handed 310
Helix 3
3
A
50 53Right-handed 310
Helix 4
4
A
54 67Right-handed alpha
Helix 5
5
A
102 116Right-handed alpha
Helix 6
6
A
142 146Right-handed 310
Helix 7
7
A
149 152Right-handed 310
Helix 8
8
A
244 260Right-handed alpha
Helix 9
9
A
287 299Right-handed alpha
Helix 10
10
A
300 316Right-handed alpha
Helix 11
11
A
320 332Right-handed alpha
Helix 12
12
A
333 336Right-handed 310
Helix 13
13
A
338 342Right-handed 310
Helix 14
14
A
357 369Right-handed alpha
Helix 15
15
A
373 381Right-handed alpha
Helix 16
16
A
388 393Right-handed alpha
Helix 17
17
A
394 396Right-handed 310
Helix 18
18
A
444 446Right-handed 310
Helix 19
19
A
447 461Right-handed alpha
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There are 5 sheets in PDB entry 1W5D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
432 440anti-parallel
Strand 4
A
418 426anti-parallel
Strand 5
A
408 415anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
125 128parallel
Strand 3
A
91 95parallel
Strand 4
A
73 78anti-parallel
Strand 5
A
278 284anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
120 121parallel
Strand 3
A
263 264parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
169 175anti-parallel
Strand 3
A
236 241anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 204first strand
Strand 2
A
222 230parallel
Strand 3
A
213 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il