Analysis of interatomic Contacts of Structural Units in PDB entry:
1W5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W5F entry

There are 2 chains in PDB entry 1W5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22PRO 337
B
 LEU 22PRO 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1W5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 44Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
84 95Right-handed alpha
Helix 4
4
A
95 103Right-handed alpha
Helix 5
5
A
118 134Right-handed alpha
Helix 6
6
A
146 149Right-handed 310
Helix 7
7
A
150 167Right-handed alpha
Helix 8
8
A
176 181Right-handed alpha
Helix 9
9
A
188 213Right-handed alpha
Helix 10
10
A
218 231Right-handed alpha
Helix 11
11
A
247 258Right-handed alpha
Helix 12
12
A
265 269Right-handed 310
Helix 13
13
A
283 296Right-handed alpha
Helix 14
14
A
331 336Right-handed alpha
Helix 15
15
B
30 44Right-handed alpha
Helix 16
16
B
56 62Right-handed alpha
Helix 17
17
B
72 77Right-handed alpha
Helix 18
18
B
84 95Right-handed alpha
Helix 19
19
B
95 104Right-handed alpha
Helix 20
20
B
118 134Right-handed alpha
Helix 21
21
B
146 149Right-handed 310
Helix 22
22
B
150 166Right-handed alpha
Helix 23
23
B
176 183Right-handed alpha
Helix 24
24
B
188 213Right-handed alpha
Helix 25
25
B
218 231Right-handed alpha
Helix 26
26
B
247 258Right-handed alpha
Helix 27
27
B
265 269Right-handed 310
Helix 28
28
B
283 297Right-handed alpha
Helix 29
29
B
331 336Right-handed alpha
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There are 2 sheets in PDB entry 1W5F. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
48 54parallel
Strand 3
A
24 29parallel
Strand 4
A
108 114parallel
Strand 5
A
137 144parallel
Strand 6
A
170 175parallel
Strand 7
B
234 244parallel
Strand 8
B
318 326anti-parallel
Strand 9
B
271 278anti-parallel
Strand 10
B
303 310parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
271 278parallel
Strand 3
A
318 326anti-parallel
Strand 4
A
234 244anti-parallel
Strand 5
B
170 175parallel
Strand 6
B
137 144parallel
Strand 7
B
108 114parallel
Strand 8
B
24 29parallel
Strand 9
B
48 54parallel
Strand 10
B
67 70parallel
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