Analysis of interatomic Contacts of Structural Units in PDB entry:
1W5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W5S entry

There are 2 chains in PDB entry 1W5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7SER 409
B
 GLY 7SER 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 1W5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed 310
Helix 2
2
A
28 44Right-handed alpha
Helix 3
3
A
64 83Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
121 137Right-handed alpha
Helix 7
7
A
147 152Right-handed alpha
Helix 8
8
A
157 166Right-handed alpha
Helix 9
9
A
166 171Right-handed alpha
Helix 10
10
A
189 199Right-handed alpha
Helix 11
11
A
199 204Right-handed alpha
Helix 12
12
A
216 232Right-handed alpha
Helix 13
13
A
238 250Right-handed alpha
Helix 14
14
A
251 254Right-handed 310
Helix 15
15
A
258 276Right-handed alpha
Helix 16
16
A
282 293Right-handed alpha
Helix 17
17
A
307 323Right-handed alpha
Helix 18
18
A
329 346Right-handed alpha
Helix 19
19
A
351 365Right-handed alpha
Helix 20
20
A
391 408Right-handed alpha
Helix 21
21
B
11 16Right-handed 310
Helix 22
22
B
28 44Right-handed alpha
Helix 23
23
B
64 83Right-handed alpha
Helix 24
24
B
95 97Right-handed 310
Helix 25
25
B
99 112Right-handed alpha
Helix 26
26
B
121 137Right-handed alpha
Helix 27
27
B
147 152Right-handed alpha
Helix 28
28
B
157 166Right-handed alpha
Helix 29
29
B
166 171Right-handed alpha
Helix 30
30
B
189 199Right-handed alpha
Helix 31
31
B
199 204Right-handed alpha
Helix 32
32
B
216 232Right-handed alpha
Helix 33
33
B
233 237Right-handed 310
Helix 34
34
B
238 250Right-handed alpha
Helix 35
35
B
251 254Right-handed 310
Helix 36
36
B
258 274Right-handed alpha
Helix 37
37
B
275 277Right-handed 310
Helix 38
38
B
282 293Right-handed alpha
Helix 39
39
B
300 306Right-handed alpha
Helix 40
40
B
307 322Right-handed alpha
Helix 41
41
B
330 342Right-handed alpha
Helix 42
42
B
351 365Right-handed alpha
Helix 43
43
B
391 409Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1W5S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
A
139 145parallel
Strand 3
A
180 188parallel
Strand 4
A
51 56parallel
Strand 5
A
208 211parallel
Strand 6
B
208 211anti-parallel
Strand 7
B
51 56parallel
Strand 8
B
178 188parallel
Strand 9
B
47 48parallel
Back to list of sheets
Back to top of page

There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
A
139 145parallel
Strand 3
A
180 188parallel
Strand 4
A
51 56parallel
Strand 5
A
208 211parallel
Strand 6
B
208 211anti-parallel
Strand 7
B
51 56parallel
Strand 8
B
178 188parallel
Strand 9
B
139 145parallel
Strand 10
B
87 93parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
383 386anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
383 386anti-parallel
Strand 3
B
368 371anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il