Analysis of interatomic Contacts of Structural Units in PDB entry:
1W5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W5T entry

There are 3 chains in PDB entry 1W5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7GLY 410
B
 GLY 7GLY 410
C
 GLY 7GLY 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 1W5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed 310
Helix 2
2
A
27 44Right-handed alpha
Helix 3
3
A
64 83Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
121 137Right-handed alpha
Helix 7
7
A
147 152Right-handed alpha
Helix 8
8
A
157 166Right-handed alpha
Helix 9
9
A
166 171Right-handed alpha
Helix 10
10
A
189 199Right-handed alpha
Helix 11
11
A
199 204Right-handed alpha
Helix 12
12
A
216 232Right-handed alpha
Helix 13
13
A
238 250Right-handed alpha
Helix 14
14
A
251 254Right-handed 310
Helix 15
15
A
258 276Right-handed alpha
Helix 16
16
A
282 293Right-handed alpha
Helix 17
17
A
299 305Right-handed alpha
Helix 18
18
A
307 323Right-handed alpha
Helix 19
19
A
330 346Right-handed alpha
Helix 20
20
A
351 365Right-handed alpha
Helix 21
21
A
391 409Right-handed alpha
Helix 22
22
B
11 16Right-handed 310
Helix 23
23
B
27 44Right-handed alpha
Helix 24
24
B
64 83Right-handed alpha
Helix 25
25
B
95 97Right-handed 310
Helix 26
26
B
99 112Right-handed alpha
Helix 27
27
B
121 137Right-handed alpha
Helix 28
28
B
146 151Right-handed 310
Helix 29
29
B
157 166Right-handed alpha
Helix 30
30
B
166 171Right-handed alpha
Helix 31
31
B
189 199Right-handed alpha
Helix 32
32
B
199 204Right-handed alpha
Helix 33
33
B
216 232Right-handed alpha
Helix 34
34
B
238 250Right-handed alpha
Helix 35
35
B
251 254Right-handed 310
Helix 36
36
B
258 276Right-handed alpha
Helix 37
37
B
282 293Right-handed alpha
Helix 38
38
B
299 305Right-handed alpha
Helix 39
39
B
307 323Right-handed alpha
Helix 40
40
B
330 346Right-handed alpha
Helix 41
41
B
351 365Right-handed alpha
Helix 42
42
B
391 409Right-handed alpha
Helix 43
43
C
11 16Right-handed 310
Helix 44
44
C
27 44Right-handed alpha
Helix 45
45
C
64 82Right-handed alpha
Helix 46
46
C
99 112Right-handed alpha
Helix 47
47
C
121 137Right-handed alpha
Helix 48
48
C
146 152Right-handed alpha
Helix 49
49
C
157 165Right-handed alpha
Helix 50
50
C
166 170Right-handed 310
Helix 51
51
C
188 199Right-handed alpha
Helix 52
52
C
199 204Right-handed alpha
Helix 53
53
C
216 232Right-handed alpha
Helix 54
54
C
238 250Right-handed alpha
Helix 55
55
C
251 254Right-handed 310
Helix 56
56
C
258 276Right-handed alpha
Helix 57
57
C
282 293Right-handed alpha
Helix 58
58
C
299 304Right-handed 310
Helix 59
59
C
307 323Right-handed alpha
Helix 60
60
C
330 344Right-handed alpha
Helix 61
61
C
351 365Right-handed alpha
Helix 62
62
C
391 407Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1W5T. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
A
139 145parallel
Strand 3
A
180 186parallel
Strand 4
A
51 56parallel
Strand 5
A
206 212parallel
Strand 6
C
208 211anti-parallel
Strand 7
C
52 55parallel
Strand 8
C
180 186parallel
Strand 9
C
138 145parallel
Strand 10
C
86 93parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
382 386anti-parallel
Strand 3
A
368 372anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 93first strand
Strand 2
B
139 145parallel
Strand 3
B
180 186parallel
Strand 4
B
51 56parallel
Strand 5
B
206 212parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
382 386anti-parallel
Strand 3
B
368 372anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 329first strand
Strand 2
C
383 386anti-parallel
Strand 3
C
368 370anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il