Analysis of interatomic Contacts of Structural Units in PDB entry:
1W6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W6F entry

There are 4 chains in PDB entry 1W6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3THR 275
B
 GLY 7THR 275
C
 ASP 4THR 275
D
 GLY 6ASP 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1W6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
21 36Right-handed alpha
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
53 62Right-handed alpha
Helix 5
5
A
69 84Right-handed alpha
Helix 6
6
A
185 199Right-handed alpha
Helix 7
7
A
202 207Right-handed alpha
Helix 8
8
A
241 252Right-handed alpha
Helix 9
9
A
257 261Right-handed 310
Helix 10
10
A
264 272Right-handed alpha
Helix 11
11
B
7 13Right-handed alpha
Helix 12
12
B
21 36Right-handed alpha
Helix 13
13
B
40 45Right-handed alpha
Helix 14
14
B
53 62Right-handed alpha
Helix 15
15
B
69 85Right-handed alpha
Helix 16
16
B
185 199Right-handed alpha
Helix 17
17
B
202 207Right-handed alpha
Helix 18
18
B
241 252Right-handed alpha
Helix 19
19
B
257 261Right-handed 310
Helix 20
20
B
264 272Right-handed alpha
Helix 21
21
C
5 12Right-handed alpha
Helix 22
22
C
21 36Right-handed alpha
Helix 23
23
C
40 45Right-handed alpha
Helix 24
24
C
53 62Right-handed alpha
Helix 25
25
C
69 85Right-handed alpha
Helix 26
26
C
185 199Right-handed alpha
Helix 27
27
C
202 207Right-handed alpha
Helix 28
28
C
241 252Right-handed alpha
Helix 29
29
C
256 261Right-handed 310
Helix 30
30
C
264 272Right-handed alpha
Helix 31
31
D
6 12Right-handed alpha
Helix 32
32
D
21 36Right-handed alpha
Helix 33
33
D
40 45Right-handed alpha
Helix 34
34
D
53 62Right-handed alpha
Helix 35
35
D
69 84Right-handed alpha
Helix 36
36
D
185 199Right-handed alpha
Helix 37
37
D
202 207Right-handed alpha
Helix 38
38
D
241 252Right-handed alpha
Helix 39
39
D
256 261Right-handed 310
Helix 40
40
D
264 272Right-handed alpha
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There are 6 sheets in PDB entry 1W6F. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, A,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
217 222anti-parallel
Strand 4
A
225 230anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
B
233 239anti-parallel
Strand 7
B
225 230anti-parallel
Strand 8
B
218 222anti-parallel
Strand 9
B
209 213anti-parallel
Strand 10
B
38 39anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
108 116anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
162 169anti-parallel
Strand 7
A
154 159anti-parallel
Strand 8
A
146 147anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
124 126anti-parallel
Strand 3
B
108 116anti-parallel
Strand 4
B
87 95anti-parallel
Strand 5
B
172 179anti-parallel
Strand 6
B
162 169anti-parallel
Strand 7
B
154 159anti-parallel
Strand 8
B
146 147anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
209 213anti-parallel
Strand 3
C
217 222anti-parallel
Strand 4
C
225 230anti-parallel
Strand 5
C
233 238anti-parallel
Strand 6
D
234 239anti-parallel
Strand 7
D
225 230anti-parallel
Strand 8
D
217 222anti-parallel
Strand 9
D
209 213anti-parallel
Strand 10
D
38 39anti-parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 140first strand
Strand 2
C
124 126anti-parallel
Strand 3
C
108 116anti-parallel
Strand 4
C
87 95anti-parallel
Strand 5
C
172 179anti-parallel
Strand 6
C
162 169anti-parallel
Strand 7
C
154 159anti-parallel
Strand 8
C
146 147anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 140first strand
Strand 2
D
124 126anti-parallel
Strand 3
D
108 116anti-parallel
Strand 4
D
87 95anti-parallel
Strand 5
D
172 179anti-parallel
Strand 6
D
162 169anti-parallel
Strand 7
D
153 159anti-parallel
Strand 8
D
146 148anti-parallel
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