Analysis of interatomic Contacts of Structural Units in PDB entry:
1W78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W78 entry

There are 2 chains in PDB entry 1W78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLU 187
A
 ALA 189SER 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1W78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
59 74Right-handed alpha
Helix 4
4
A
88 91Right-handed 310
Helix 5
5
A
101 116Right-handed alpha
Helix 6
6
A
122 139Right-handed alpha
Helix 7
7
A
154 159Right-handed 310
Helix 8
8
A
173 178Right-handed alpha
Helix 9
9
A
180 187Right-handed alpha
Helix 10
10
A
206 217Right-handed alpha
Helix 11
11
A
254 269Right-handed alpha
Helix 12
12
A
273 284Right-handed alpha
Helix 13
13
A
306 320Right-handed alpha
Helix 14
14
A
337 347Right-handed alpha
Helix 15
15
A
364 373Right-handed alpha
Helix 16
16
A
380 392Right-handed alpha
Helix 17
17
A
403 418Right-handed alpha
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There are 3 sheets in PDB entry 1W78. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
78 81anti-parallel
Strand 4
A
142 146parallel
Strand 5
A
50 55parallel
Strand 6
A
163 166parallel
Strand 7
A
197 200parallel
Strand 8
A
219 222parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
236 240anti-parallel
Strand 3
A
243 248anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
397 401parallel
Strand 4
A
326 330parallel
Strand 5
A
351 354parallel
Strand 6
A
376 377parallel
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