Analysis of interatomic Contacts of Structural Units in PDB entry:
1W7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W7M entry

There is 1 chain in PDB entry 1W7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLU 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1W7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
16 25Right-handed alpha
Helix 3
3
A
43 54Right-handed alpha
Helix 4
4
A
57 62Right-handed 310
Helix 5
5
A
69 85Right-handed alpha
Helix 6
6
A
89 93Right-handed alpha
Helix 7
7
A
98 112Right-handed alpha
Helix 8
8
A
127 135Right-handed alpha
Helix 9
9
A
158 160Right-handed 310
Helix 10
10
A
163 171Right-handed alpha
Helix 11
11
A
192 207Right-handed alpha
Helix 12
12
A
228 232Right-handed 310
Helix 13
13
A
235 237Right-handed 310
Helix 14
14
A
245 249Right-handed alpha
Helix 15
15
A
251 255Right-handed 310
Helix 16
16
A
262 275Right-handed alpha
Helix 17
17
A
281 298Right-handed alpha
Helix 18
18
A
304 326Right-handed alpha
Helix 19
19
A
344 351Right-handed alpha
Helix 20
20
A
361 374Right-handed alpha
Helix 21
21
A
382 385Right-handed 310
Helix 22
22
A
386 390Right-handed 310
Helix 23
23
A
404 420Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1W7M. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
376 377parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
239 244anti-parallel
Strand 4
A
209 213parallel
Strand 5
A
175 181parallel
Strand 6
A
117 122parallel
Strand 7
A
138 143parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
330 333parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
396 400anti-parallel
Strand 5
A
379 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il