Analysis of interatomic Contacts of Structural Units in PDB entry:
1W85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1W85 entry

There are 10 chains in PDB entry 1W85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LYS 368
B	ALA 1	PHE 324
C	THR 4	LYS 368
D	ALA 1	PHE 324
E	PHE 5	LYS 368
F	ALA 1	PHE 324
G	PHE 5	LYS 368
H	ALA 1	PHE 324
I	ARG 128	GLY 169
J	VAL 129	LEU 167

There are145 helices in PDB entry 1W85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	19	Right-handed alpha
Helix 2	2	A	34	38	Right-handed 310
Helix 3	3	A	42	69	Right-handed alpha
Helix 4	4	A	81	91	Right-handed alpha
Helix 5	5	A	104	111	Right-handed alpha
Helix 6	6	A	114	124	Right-handed alpha
Helix 7	7	A	125	130	Right-handed 310
Helix 8	8	A	145	161	Right-handed alpha
Helix 9	9	A	174	177	Right-handed 310
Helix 10	10	A	178	191	Right-handed alpha
Helix 11	11	A	211	213	Right-handed 310
Helix 12	12	A	219	226	Right-handed 310
Helix 13	13	A	237	254	Right-handed alpha
Helix 14	14	A	283	292	Right-handed alpha
Helix 15	15	A	294	306	Right-handed alpha
Helix 16	16	A	310	334	Right-handed alpha
Helix 17	17	A	339	346	Right-handed alpha
Helix 18	18	A	352	366	Right-handed alpha
Helix 19	19	B	4	20	Right-handed alpha
Helix 20	20	B	42	48	Right-handed alpha
Helix 21	21	B	58	72	Right-handed alpha
Helix 22	22	B	82	88	Right-handed 310
Helix 23	23	B	89	95	Right-handed alpha
Helix 24	24	B	96	98	Right-handed 310
Helix 25	25	B	99	104	Right-handed alpha
Helix 26	26	B	132	137	Right-handed alpha
Helix 27	27	B	149	163	Right-handed alpha
Helix 28	28	B	211	226	Right-handed alpha
Helix 29	29	B	242	254	Right-handed alpha
Helix 30	30	B	268	281	Right-handed alpha
Helix 31	31	B	282	284	Right-handed 310
Helix 32	32	B	300	302	Right-handed 310
Helix 33	33	B	303	308	Right-handed alpha
Helix 34	34	B	310	323	Right-handed alpha
Helix 35	35	C	8	18	Right-handed alpha
Helix 36	36	C	34	38	Right-handed 310
Helix 37	37	C	42	69	Right-handed alpha
Helix 38	38	C	81	91	Right-handed alpha
Helix 39	39	C	104	112	Right-handed alpha
Helix 40	40	C	114	124	Right-handed alpha
Helix 41	41	C	125	130	Right-handed 310
Helix 42	42	C	145	161	Right-handed alpha
Helix 43	43	C	174	177	Right-handed 310
Helix 44	44	C	178	191	Right-handed alpha
Helix 45	45	C	211	213	Right-handed 310
Helix 46	46	C	219	227	Right-handed 310
Helix 47	47	C	237	254	Right-handed alpha
Helix 48	48	C	277	281	Right-handed 310
Helix 49	49	C	283	292	Right-handed alpha
Helix 50	50	C	294	306	Right-handed alpha
Helix 51	51	C	310	334	Right-handed alpha
Helix 52	52	C	339	346	Right-handed alpha
Helix 53	53	C	352	368	Right-handed alpha
Helix 54	54	D	4	20	Right-handed alpha
Helix 55	55	D	42	48	Right-handed alpha
Helix 56	56	D	58	72	Right-handed alpha
Helix 57	57	D	82	88	Right-handed 310
Helix 58	58	D	89	95	Right-handed alpha
Helix 59	59	D	96	98	Right-handed 310
Helix 60	60	D	99	104	Right-handed alpha
Helix 61	61	D	132	137	Right-handed alpha
Helix 62	62	D	149	163	Right-handed alpha
Helix 63	63	D	174	176	Right-handed 310
Helix 64	64	D	211	226	Right-handed alpha
Helix 65	65	D	242	254	Right-handed alpha
Helix 66	66	D	268	281	Right-handed alpha
Helix 67	67	D	282	284	Right-handed 310
Helix 68	68	D	300	302	Right-handed 310
Helix 69	69	D	303	308	Right-handed alpha
Helix 70	70	D	310	323	Right-handed alpha
Helix 71	71	E	8	19	Right-handed alpha
Helix 72	72	E	34	38	Right-handed 310
Helix 73	73	E	42	69	Right-handed alpha
Helix 74	74	E	81	91	Right-handed alpha
Helix 75	75	E	104	111	Right-handed alpha
Helix 76	76	E	114	124	Right-handed alpha
Helix 77	77	E	125	130	Right-handed 310
Helix 78	78	E	145	161	Right-handed alpha
Helix 79	79	E	174	177	Right-handed 310
Helix 80	80	E	178	191	Right-handed alpha
Helix 81	81	E	219	227	Right-handed 310
Helix 82	82	E	237	254	Right-handed alpha
Helix 83	83	E	284	292	Right-handed alpha
Helix 84	84	E	294	305	Right-handed alpha
Helix 85	85	E	310	335	Right-handed alpha
Helix 86	86	E	339	346	Right-handed alpha
Helix 87	87	E	352	368	Right-handed alpha
Helix 88	88	F	4	20	Right-handed alpha
Helix 89	89	F	42	48	Right-handed alpha
Helix 90	90	F	58	72	Right-handed alpha
Helix 91	91	F	82	88	Right-handed 310
Helix 92	92	F	89	95	Right-handed alpha
Helix 93	93	F	96	98	Right-handed 310
Helix 94	94	F	99	104	Right-handed alpha
Helix 95	95	F	132	137	Right-handed alpha
Helix 96	96	F	149	163	Right-handed alpha
Helix 97	97	F	174	176	Right-handed 310
Helix 98	98	F	211	225	Right-handed alpha
Helix 99	99	F	242	254	Right-handed alpha
Helix 100	100	F	268	280	Right-handed alpha
Helix 101	101	F	281	284	Right-handed 310
Helix 102	102	F	300	302	Right-handed 310
Helix 103	103	F	303	308	Right-handed alpha
Helix 104	104	F	310	324	Right-handed alpha
Helix 105	105	G	8	18	Right-handed alpha
Helix 106	106	G	34	38	Right-handed 310
Helix 107	107	G	42	69	Right-handed alpha
Helix 108	108	G	81	91	Right-handed alpha
Helix 109	109	G	104	111	Right-handed alpha
Helix 110	110	G	114	124	Right-handed alpha
Helix 111	111	G	125	130	Right-handed 310
Helix 112	112	G	145	161	Right-handed alpha
Helix 113	113	G	174	177	Right-handed 310
Helix 114	114	G	178	191	Right-handed alpha
Helix 115	115	G	211	213	Right-handed 310
Helix 116	116	G	219	226	Right-handed 310
Helix 117	117	G	237	254	Right-handed alpha
Helix 118	118	G	277	281	Right-handed 310
Helix 119	119	G	283	292	Right-handed alpha
Helix 120	120	G	294	305	Right-handed alpha
Helix 121	121	G	310	334	Right-handed alpha
Helix 122	122	G	339	346	Right-handed alpha
Helix 123	123	G	352	367	Right-handed alpha
Helix 124	124	H	4	20	Right-handed alpha
Helix 125	125	H	42	48	Right-handed alpha
Helix 126	126	H	58	72	Right-handed alpha
Helix 127	127	H	82	88	Right-handed 310
Helix 128	128	H	89	95	Right-handed alpha
Helix 129	129	H	96	98	Right-handed 310
Helix 130	130	H	99	104	Right-handed alpha
Helix 131	131	H	132	137	Right-handed alpha
Helix 132	132	H	149	163	Right-handed alpha
Helix 133	133	H	211	225	Right-handed alpha
Helix 134	134	H	242	254	Right-handed alpha
Helix 135	135	H	268	281	Right-handed alpha
Helix 136	136	H	282	284	Right-handed 310
Helix 137	137	H	300	302	Right-handed 310
Helix 138	138	H	303	308	Right-handed alpha
Helix 139	139	H	310	323	Right-handed alpha
Helix 140	140	I	132	142	Right-handed alpha
Helix 141	141	I	153	157	Right-handed 310
Helix 142	142	I	159	168	Right-handed alpha
Helix 143	143	J	132	142	Right-handed alpha
Helix 144	144	J	153	157	Right-handed 310
Helix 145	145	J	161	166	Right-handed alpha

There are 23 sheets in PDB entry 1W85. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD, CA, CB, A, DB, C, DD, EA, FA, FB, FC, FD, GA, GB, HA, HB, HC, HD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	230	234	parallel
Strand 3	A	259	264	parallel
Strand 4	A	195	201	parallel
Strand 5	A	167	172	parallel
Strand 6	A	97	99	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	208	209	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	181	182	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	23	27	parallel
Strand 3	B	75	78	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	118	first strand
Strand 2	B	167	172	parallel
Strand 3	B	143	145	parallel
Strand 4	B	237	239	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	B	204	208	parallel
Strand 4	B	256	263	parallel
Strand 5	B	289	293	parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	230	234	parallel
Strand 3	C	259	264	parallel
Strand 4	C	195	201	parallel
Strand 5	C	167	172	parallel
Strand 6	C	97	99	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	181	182	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	23	27	parallel
Strand 3	D	75	78	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	118	first strand
Strand 2	D	167	172	parallel
Strand 3	D	143	145	parallel
Strand 4	D	237	239	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	230	234	anti-parallel
Strand 3	D	204	208	parallel
Strand 4	D	256	263	parallel
Strand 5	D	289	293	parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	23	first strand
Strand 2	E	230	234	parallel
Strand 3	E	259	264	parallel
Strand 4	E	195	201	parallel
Strand 5	E	167	172	parallel
Strand 6	E	97	99	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	181	182	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	23	27	parallel
Strand 3	F	75	78	parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	118	first strand
Strand 2	F	167	172	parallel
Strand 3	F	143	145	parallel
Strand 4	F	237	239	anti-parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	199	first strand
Strand 2	F	230	234	anti-parallel
Strand 3	F	204	208	parallel
Strand 4	F	256	263	parallel
Strand 5	F	289	293	parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	167	172	parallel
Strand 3	G	195	201	parallel
Strand 4	G	259	264	parallel
Strand 5	G	230	234	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	208	209	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	3	first strand
Strand 2	H	181	182	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	54	first strand
Strand 2	H	23	27	parallel
Strand 3	H	75	78	parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	118	first strand
Strand 2	H	167	172	parallel
Strand 3	H	143	145	parallel
Strand 4	H	237	239	anti-parallel

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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	196	199	first strand
Strand 2	H	230	234	anti-parallel
Strand 3	H	204	208	parallel
Strand 4	H	256	263	parallel
Strand 5	H	289	293	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1W85

Analysis of interatomic Contacts of Structural Units in PDB entry:
1W85