Analysis of interatomic Contacts of Structural Units in PDB entry:
1W8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W8D entry

There are 4 chains in PDB entry 1W8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 35LEU 328
B
 MSE 34ILE 329
C
 THR 36LEU 328
D
 MSE 34GLU 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1W8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 44Right-handed alpha
Helix 2
2
A
69 82Right-handed alpha
Helix 3
3
A
92 108Right-handed alpha
Helix 4
4
A
120 135Right-handed alpha
Helix 5
5
A
152 156Right-handed 310
Helix 6
6
A
157 186Right-handed alpha
Helix 7
7
A
198 203Right-handed alpha
Helix 8
8
A
207 229Right-handed alpha
Helix 9
9
A
256 264Right-handed alpha
Helix 10
10
A
273 285Right-handed alpha
Helix 11
11
A
286 290Right-handed 310
Helix 12
12
A
302 309Right-handed alpha
Helix 13
13
A
311 317Right-handed 310
Helix 14
14
A
318 326Right-handed alpha
Helix 15
15
B
35 44Right-handed alpha
Helix 16
16
B
69 82Right-handed alpha
Helix 17
17
B
92 108Right-handed alpha
Helix 18
18
B
120 135Right-handed alpha
Helix 19
19
B
152 156Right-handed 310
Helix 20
20
B
157 187Right-handed alpha
Helix 21
21
B
198 203Right-handed alpha
Helix 22
22
B
207 228Right-handed alpha
Helix 23
23
B
229 231Right-handed 310
Helix 24
24
B
273 285Right-handed alpha
Helix 25
25
B
286 290Right-handed 310
Helix 26
26
B
302 309Right-handed alpha
Helix 27
27
B
310 317Right-handed 310
Helix 28
28
B
318 329Right-handed alpha
Helix 29
29
C
36 44Right-handed alpha
Helix 30
30
C
69 82Right-handed alpha
Helix 31
31
C
92 108Right-handed alpha
Helix 32
32
C
120 135Right-handed alpha
Helix 33
33
C
152 156Right-handed 310
Helix 34
34
C
157 186Right-handed alpha
Helix 35
35
C
198 203Right-handed alpha
Helix 36
36
C
207 228Right-handed alpha
Helix 37
37
C
229 231Right-handed 310
Helix 38
38
C
256 264Right-handed alpha
Helix 39
39
C
273 286Right-handed alpha
Helix 40
40
C
287 290Right-handed 310
Helix 41
41
C
302 309Right-handed alpha
Helix 42
42
C
311 317Right-handed 310
Helix 43
43
C
318 327Right-handed alpha
Helix 44
44
D
35 44Right-handed alpha
Helix 45
45
D
69 82Right-handed alpha
Helix 46
46
D
92 108Right-handed alpha
Helix 47
47
D
120 135Right-handed alpha
Helix 48
48
D
152 156Right-handed 310
Helix 49
49
D
157 186Right-handed alpha
Helix 50
50
D
198 203Right-handed alpha
Helix 51
51
D
207 228Right-handed alpha
Helix 52
52
D
229 231Right-handed 310
Helix 53
53
D
260 266Right-handed 310
Helix 54
54
D
274 285Right-handed alpha
Helix 55
55
D
286 290Right-handed 310
Helix 56
56
D
302 309Right-handed alpha
Helix 57
57
D
310 315Right-handed 310
Helix 58
58
D
318 326Right-handed alpha
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There are 5 sheets in PDB entry 1W8D. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
85 90parallel
Strand 3
A
61 65parallel
Strand 4
A
140 143parallel
Strand 5
A
190 195parallel
Strand 6
A
233 240parallel
Strand 7
A
296 299parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
85 90parallel
Strand 3
B
61 65parallel
Strand 4
B
140 143parallel
Strand 5
B
190 195parallel
Strand 6
B
233 240parallel
Strand 7
B
296 299parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 115first strand
Strand 2
C
85 90parallel
Strand 3
C
61 65parallel
Strand 4
C
140 143parallel
Strand 5
C
190 195parallel
Strand 6
C
233 240parallel
Strand 7
C
296 299parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 115first strand
Strand 2
D
85 90parallel
Strand 3
D
61 65parallel
Strand 4
D
140 143parallel
Strand 5
D
190 195parallel
Strand 6
D
233 240parallel
Strand 7
D
296 299parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
243 244first strand
Strand 2
D
272 273parallel
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