Analysis of interatomic Contacts of Structural Units in PDB entry:
1W8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1W8J entry

There are 4 chains in PDB entry 1W8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 766
B	MET 1	ALA 764
C	MET 1	LYS 766
D	GLU 5	LYS 766

There are133 helices in PDB entry 1W8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	74	77	Right-handed 310
Helix 2	2	A	81	95	Right-handed alpha
Helix 3	3	A	120	128	Right-handed alpha
Helix 4	4	A	138	154	Right-handed alpha
Helix 5	5	A	168	181	Right-handed alpha
Helix 6	6	A	191	207	Right-handed alpha
Helix 7	7	A	245	250	Right-handed 310
Helix 8	8	A	259	267	Right-handed alpha
Helix 9	9	A	271	275	Right-handed 310
Helix 10	10	A	281	284	Right-handed 310
Helix 11	11	A	285	290	Right-handed alpha
Helix 12	12	A	300	315	Right-handed alpha
Helix 13	13	A	318	337	Right-handed alpha
Helix 14	14	A	354	365	Right-handed alpha
Helix 15	15	A	367	375	Right-handed alpha
Helix 16	16	A	392	424	Right-handed alpha
Helix 17	17	A	448	481	Right-handed alpha
Helix 18	18	A	483	487	Right-handed 310
Helix 19	19	A	492	501	Right-handed alpha
Helix 20	20	A	504	514	Right-handed alpha
Helix 21	21	A	519	532	Right-handed alpha
Helix 22	22	A	563	569	Right-handed alpha
Helix 23	23	A	573	581	Right-handed alpha
Helix 24	24	A	587	594	Right-handed alpha
Helix 25	25	A	635	653	Right-handed alpha
Helix 26	26	A	674	685	Right-handed alpha
Helix 27	27	A	686	695	Right-handed alpha
Helix 28	28	A	704	712	Right-handed alpha
Helix 29	29	A	713	715	Right-handed 310
Helix 30	30	A	723	736	Right-handed alpha
Helix 31	31	A	738	740	Right-handed 310
Helix 32	32	A	754	763	Right-handed alpha
Helix 33	33	B	2	7	Right-handed alpha
Helix 34	34	B	74	77	Right-handed 310
Helix 35	35	B	81	95	Right-handed alpha
Helix 36	36	B	120	128	Right-handed alpha
Helix 37	37	B	138	153	Right-handed alpha
Helix 38	38	B	168	182	Right-handed alpha
Helix 39	39	B	191	207	Right-handed alpha
Helix 40	40	B	245	250	Right-handed 310
Helix 41	41	B	259	267	Right-handed alpha
Helix 42	42	B	271	275	Right-handed 310
Helix 43	43	B	285	289	Right-handed 310
Helix 44	44	B	300	315	Right-handed alpha
Helix 45	45	B	318	336	Right-handed alpha
Helix 46	46	B	354	365	Right-handed alpha
Helix 47	47	B	367	376	Right-handed alpha
Helix 48	48	B	392	424	Right-handed alpha
Helix 49	49	B	448	479	Right-handed alpha
Helix 50	50	B	483	487	Right-handed 310
Helix 51	51	B	492	501	Right-handed alpha
Helix 52	52	B	504	515	Right-handed alpha
Helix 53	53	B	519	532	Right-handed alpha
Helix 54	54	B	563	569	Right-handed alpha
Helix 55	55	B	573	582	Right-handed alpha
Helix 56	56	B	587	592	Right-handed alpha
Helix 57	57	B	629	634	Right-handed alpha
Helix 58	58	B	635	653	Right-handed alpha
Helix 59	59	B	674	685	Right-handed alpha
Helix 60	60	B	686	697	Right-handed alpha
Helix 61	61	B	704	711	Right-handed alpha
Helix 62	62	B	723	736	Right-handed alpha
Helix 63	63	B	738	740	Right-handed 310
Helix 64	64	B	754	762	Right-handed alpha
Helix 65	65	C	73	77	Right-handed 310
Helix 66	66	C	81	94	Right-handed alpha
Helix 67	67	C	116	119	Right-handed 310
Helix 68	68	C	120	128	Right-handed alpha
Helix 69	69	C	138	154	Right-handed alpha
Helix 70	70	C	168	183	Right-handed alpha
Helix 71	71	C	193	199	Right-handed alpha
Helix 72	72	C	199	207	Right-handed alpha
Helix 73	73	C	246	250	Right-handed 310
Helix 74	74	C	260	268	Right-handed alpha
Helix 75	75	C	281	284	Right-handed 310
Helix 76	76	C	285	290	Right-handed alpha
Helix 77	77	C	300	314	Right-handed alpha
Helix 78	78	C	319	336	Right-handed alpha
Helix 79	79	C	354	365	Right-handed alpha
Helix 80	80	C	367	375	Right-handed alpha
Helix 81	81	C	392	424	Right-handed alpha
Helix 82	82	C	448	480	Right-handed alpha
Helix 83	83	C	483	487	Right-handed 310
Helix 84	84	C	492	501	Right-handed alpha
Helix 85	85	C	504	514	Right-handed alpha
Helix 86	86	C	519	532	Right-handed alpha
Helix 87	87	C	563	569	Right-handed alpha
Helix 88	88	C	573	583	Right-handed alpha
Helix 89	89	C	587	593	Right-handed alpha
Helix 90	90	C	630	634	Right-handed 310
Helix 91	91	C	635	653	Right-handed alpha
Helix 92	92	C	674	684	Right-handed alpha
Helix 93	93	C	686	696	Right-handed alpha
Helix 94	94	C	704	712	Right-handed alpha
Helix 95	95	C	713	715	Right-handed 310
Helix 96	96	C	716	720	Right-handed 310
Helix 97	97	C	723	736	Right-handed alpha
Helix 98	98	C	738	740	Right-handed 310
Helix 99	99	C	755	763	Right-handed alpha
Helix 100	100	D	65	69	Right-handed 310
Helix 101	101	D	74	77	Right-handed 310
Helix 102	102	D	81	94	Right-handed alpha
Helix 103	103	D	120	126	Right-handed alpha
Helix 104	104	D	138	153	Right-handed alpha
Helix 105	105	D	170	183	Right-handed alpha
Helix 106	106	D	193	199	Right-handed alpha
Helix 107	107	D	199	206	Right-handed alpha
Helix 108	108	D	246	250	Right-handed 310
Helix 109	109	D	259	266	Right-handed alpha
Helix 110	110	D	281	285	Right-handed 310
Helix 111	111	D	285	289	Right-handed 310
Helix 112	112	D	300	314	Right-handed alpha
Helix 113	113	D	319	336	Right-handed alpha
Helix 114	114	D	354	365	Right-handed alpha
Helix 115	115	D	369	375	Right-handed alpha
Helix 116	116	D	392	424	Right-handed alpha
Helix 117	117	D	448	480	Right-handed alpha
Helix 118	118	D	492	501	Right-handed alpha
Helix 119	119	D	504	515	Right-handed alpha
Helix 120	120	D	519	532	Right-handed alpha
Helix 121	121	D	563	569	Right-handed alpha
Helix 122	122	D	573	581	Right-handed alpha
Helix 123	123	D	587	592	Right-handed alpha
Helix 124	124	D	628	634	Right-handed alpha
Helix 125	125	D	635	654	Right-handed alpha
Helix 126	126	D	675	685	Right-handed alpha
Helix 127	127	D	686	696	Right-handed alpha
Helix 128	128	D	704	712	Right-handed alpha
Helix 129	129	D	713	715	Right-handed 310
Helix 130	130	D	716	720	Right-handed 310
Helix 131	131	D	723	736	Right-handed alpha
Helix 132	132	D	738	740	Right-handed 310
Helix 133	133	D	754	765	Right-handed alpha

There are 31 sheets in PDB entry 1W8J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG, CH, CI, A, DB, C, DD, DE, DF, G,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	21	25	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	48	49	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	655	662	parallel
Strand 4	A	157	162	parallel
Strand 5	A	431	437	parallel
Strand 6	A	221	228	anti-parallel
Strand 7	A	234	242	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	344	first strand
Strand 2	A	347	349	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	386	390	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	547	552	anti-parallel
Strand 3	A	555	560	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	703	first strand
Strand 2	A	748	751	anti-parallel
Strand 3	A	742	744	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	37	41	anti-parallel
Strand 4	B	49	51	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	106	110	anti-parallel
Strand 3	B	655	662	parallel
Strand 4	B	157	162	parallel
Strand 5	B	431	438	parallel
Strand 6	B	221	228	anti-parallel
Strand 7	B	234	242	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	214	218	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	344	first strand
Strand 2	B	347	349	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	386	390	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	547	551	anti-parallel
Strand 3	B	556	560	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	703	first strand
Strand 2	B	748	751	anti-parallel
Strand 3	B	742	744	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	21	27	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	49	50	anti-parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	655	662	parallel
Strand 4	C	157	162	parallel
Strand 5	C	431	438	parallel
Strand 6	C	221	229	anti-parallel
Strand 7	C	239	242	anti-parallel

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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	655	662	parallel
Strand 4	C	157	162	parallel
Strand 5	C	431	438	parallel
Strand 6	C	221	229	anti-parallel
Strand 7	C	233	236	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	214	218	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	344	first strand
Strand 2	C	347	349	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	382	first strand
Strand 2	C	385	390	anti-parallel

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There are 3 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	539	first strand
Strand 2	C	547	551	anti-parallel
Strand 3	C	556	560	anti-parallel

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There are 3 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	703	first strand
Strand 2	C	748	751	anti-parallel
Strand 3	C	742	744	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	22	24	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	48	49	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	103	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	655	662	parallel
Strand 4	D	157	163	parallel
Strand 5	D	431	439	parallel
Strand 6	D	221	228	anti-parallel
Strand 7	D	234	242	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	214	218	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	381	first strand
Strand 2	D	386	390	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	539	first strand
Strand 2	D	547	551	anti-parallel
Strand 3	D	556	560	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	703	first strand
Strand 2	D	748	751	anti-parallel
Strand 3	D	742	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1W8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1W8J