Analysis of interatomic Contacts of Structural Units in PDB entry:
1W93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W93 entry

There is 1 chain in PDB entry 1W93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ILE 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1W93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 54Right-handed alpha
Helix 2
2
A
67 86Right-handed alpha
Helix 3
3
A
99 104Right-handed alpha
Helix 4
4
A
123 127Right-handed 310
Helix 5
5
A
131 142Right-handed alpha
Helix 6
6
A
151 155Right-handed 310
Helix 7
7
A
157 162Right-handed alpha
Helix 8
8
A
176 182Right-handed alpha
Helix 9
9
A
185 196Right-handed alpha
Helix 10
10
A
223 228Right-handed alpha
Helix 11
11
A
234 246Right-handed alpha
Helix 12
12
A
269 282Right-handed alpha
Helix 13
13
A
338 357Right-handed alpha
Helix 14
14
A
388 394Right-handed alpha
Helix 15
15
A
398 408Right-handed alpha
Helix 16
16
A
415 423Right-handed alpha
Helix 17
17
A
515 530Right-handed alpha
Helix 18
18
A
540 548Right-handed alpha
Helix 19
19
A
560 566Right-handed alpha
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There are 6 sheets in PDB entry 1W93. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
95 98parallel
Strand 3
A
62 64parallel
Strand 4
A
145 147parallel
Strand 5
A
171 172parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
220 221anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
249 252anti-parallel
Strand 3
A
288 291anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 317first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
360 368anti-parallel
Strand 4
A
375 381anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
453 455anti-parallel
Strand 3
A
509 513anti-parallel
Strand 4
A
486 488anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
501 505anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il