Analysis of interatomic Contacts of Structural Units in PDB entry:
1W96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W96 entry

There are 3 chains in PDB entry 1W96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ILE 566
B
 LYS 13ILE 566
C
 MET 14GLU 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 1W96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
38 41Right-handed 310
Helix 4
4
A
44 53Right-handed alpha
Helix 5
5
A
67 87Right-handed alpha
Helix 6
6
A
99 105Right-handed alpha
Helix 7
7
A
107 113Right-handed alpha
Helix 8
8
A
123 127Right-handed 310
Helix 9
9
A
130 141Right-handed alpha
Helix 10
10
A
157 166Right-handed alpha
Helix 11
11
A
176 183Right-handed alpha
Helix 12
12
A
185 196Right-handed alpha
Helix 13
13
A
223 228Right-handed alpha
Helix 14
14
A
229 231Right-handed 310
Helix 15
15
A
234 246Right-handed alpha
Helix 16
16
A
267 282Right-handed alpha
Helix 17
17
A
338 357Right-handed alpha
Helix 18
18
A
387 396Right-handed alpha
Helix 19
19
A
398 408Right-handed alpha
Helix 20
20
A
411 414Right-handed 310
Helix 21
21
A
415 422Right-handed alpha
Helix 22
22
A
438 445Right-handed alpha
Helix 23
23
A
515 531Right-handed alpha
Helix 24
24
A
540 548Right-handed alpha
Helix 25
25
A
549 554Right-handed alpha
Helix 26
26
A
560 566Right-handed alpha
Helix 27
27
B
21 28Right-handed alpha
Helix 28
28
B
29 33Right-handed 310
Helix 29
29
B
44 53Right-handed alpha
Helix 30
30
B
67 87Right-handed alpha
Helix 31
31
B
99 105Right-handed alpha
Helix 32
32
B
107 113Right-handed alpha
Helix 33
33
B
123 127Right-handed 310
Helix 34
34
B
130 141Right-handed alpha
Helix 35
35
B
157 166Right-handed alpha
Helix 36
36
B
176 183Right-handed alpha
Helix 37
37
B
185 196Right-handed alpha
Helix 38
38
B
223 228Right-handed alpha
Helix 39
39
B
229 231Right-handed 310
Helix 40
40
B
234 246Right-handed alpha
Helix 41
41
B
267 269Right-handed 310
Helix 42
42
B
270 282Right-handed alpha
Helix 43
43
B
338 357Right-handed alpha
Helix 44
44
B
388 396Right-handed alpha
Helix 45
45
B
398 408Right-handed alpha
Helix 46
46
B
411 414Right-handed 310
Helix 47
47
B
415 422Right-handed alpha
Helix 48
48
B
438 445Right-handed alpha
Helix 49
49
B
515 533Right-handed alpha
Helix 50
50
B
536 548Right-handed alpha
Helix 51
51
B
549 555Right-handed alpha
Helix 52
52
B
560 566Right-handed alpha
Helix 53
53
C
21 27Right-handed alpha
Helix 54
54
C
29 33Right-handed 310
Helix 55
55
C
38 41Right-handed 310
Helix 56
56
C
44 53Right-handed alpha
Helix 57
57
C
67 87Right-handed alpha
Helix 58
58
C
99 105Right-handed alpha
Helix 59
59
C
107 113Right-handed alpha
Helix 60
60
C
123 127Right-handed 310
Helix 61
61
C
130 141Right-handed alpha
Helix 62
62
C
157 166Right-handed alpha
Helix 63
63
C
176 182Right-handed alpha
Helix 64
64
C
185 196Right-handed alpha
Helix 65
65
C
223 228Right-handed alpha
Helix 66
66
C
229 231Right-handed 310
Helix 67
67
C
234 246Right-handed alpha
Helix 68
68
C
267 269Right-handed 310
Helix 69
69
C
270 282Right-handed alpha
Helix 70
70
C
338 357Right-handed alpha
Helix 71
71
C
388 396Right-handed alpha
Helix 72
72
C
398 408Right-handed alpha
Helix 73
73
C
411 414Right-handed 310
Helix 74
74
C
415 422Right-handed alpha
Helix 75
75
C
440 445Right-handed alpha
Helix 76
76
C
515 531Right-handed alpha
Helix 77
77
C
532 537Right-handed 310
Helix 78
78
C
540 548Right-handed alpha
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There are 12 sheets in PDB entry 1W96. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
93 98parallel
Strand 3
A
61 64parallel
Strand 4
A
145 147parallel
Strand 5
A
171 172parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
220 221anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
249 253anti-parallel
Strand 3
A
287 291anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 381first strand
Strand 2
A
360 368anti-parallel
Strand 3
A
297 305anti-parallel
Strand 4
A
311 323anti-parallel
Strand 5
A
326 332anti-parallel
Strand 6
A
453 462anti-parallel
Strand 7
A
504 513anti-parallel
Strand 8
A
486 492anti-parallel
Strand 9
A
475 478anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
93 98parallel
Strand 3
B
61 64parallel
Strand 4
B
145 147parallel
Strand 5
B
171 172parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
220 221anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
249 253anti-parallel
Strand 3
B
287 291anti-parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 381first strand
Strand 2
B
360 369anti-parallel
Strand 3
B
297 305anti-parallel
Strand 4
B
311 323anti-parallel
Strand 5
B
326 332anti-parallel
Strand 6
B
453 459anti-parallel
Strand 7
B
506 513anti-parallel
Strand 8
B
486 491anti-parallel
Strand 9
B
475 477anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 118first strand
Strand 2
C
93 98parallel
Strand 3
C
61 64parallel
Strand 4
C
145 147parallel
Strand 5
C
171 172parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 213first strand
Strand 2
C
220 221anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 265first strand
Strand 2
C
249 253anti-parallel
Strand 3
C
287 291anti-parallel
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There are 9 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 381first strand
Strand 2
C
360 369anti-parallel
Strand 3
C
297 305anti-parallel
Strand 4
C
311 322anti-parallel
Strand 5
C
327 332anti-parallel
Strand 6
C
453 462anti-parallel
Strand 7
C
504 513anti-parallel
Strand 8
C
486 492anti-parallel
Strand 9
C
476 478anti-parallel
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