Analysis of interatomic Contacts of Structural Units in PDB entry:
1WAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WAF entry

There are 2 chains in PDB entry 1WAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 903
B
 MET 1PHE 903
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 1WAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 78Right-handed alpha
Helix 2
2
A
88 96Right-handed alpha
Helix 3
3
A
164 167Right-handed alpha
Helix 4
4
A
171 173Right-handed 310
Helix 5
5
A
180 185Right-handed alpha
Helix 6
6
A
194 207Right-handed alpha
Helix 7
7
A
222 234Right-handed alpha
Helix 8
8
A
236 242Right-handed alpha
Helix 9
9
A
273 280Right-handed alpha
Helix 10
10
A
290 298Right-handed alpha
Helix 11
11
A
312 338Right-handed alpha
Helix 12
12
A
340 350Right-handed alpha
Helix 13
13
A
361 376Right-handed alpha
Helix 14
14
A
416 422Right-handed alpha
Helix 15
15
A
439 444Right-handed alpha
Helix 16
16
A
470 494Right-handed alpha
Helix 17
17
A
496 501Right-handed alpha
Helix 18
18
A
524 531Right-handed alpha
Helix 19
19
A
540 564Right-handed alpha
Helix 20
20
A
566 570Right-handed alpha
Helix 21
21
A
580 608Right-handed alpha
Helix 22
22
A
630 636Right-handed alpha
Helix 23
23
A
644 657Right-handed alpha
Helix 24
24
A
659 674Right-handed alpha
Helix 25
25
A
739 754Right-handed alpha
Helix 26
26
A
757 773Right-handed alpha
Helix 27
27
A
776 779Right-handed alpha
Helix 28
28
A
789 792Right-handed alpha
Helix 29
29
A
803 812Right-handed alpha
Helix 30
30
A
856 865Right-handed alpha
Helix 31
31
A
868 875Right-handed alpha
Helix 32
32
A
877 887Right-handed alpha
Helix 33
33
B
65 78Right-handed alpha
Helix 34
34
B
88 96Right-handed alpha
Helix 35
35
B
164 168Right-handed alpha
Helix 36
36
B
180 183Right-handed alpha
Helix 37
37
B
194 207Right-handed alpha
Helix 38
38
B
222 233Right-handed alpha
Helix 39
39
B
236 242Right-handed alpha
Helix 40
40
B
273 280Right-handed alpha
Helix 41
41
B
290 297Right-handed alpha
Helix 42
42
B
309 338Right-handed alpha
Helix 43
43
B
340 351Right-handed alpha
Helix 44
44
B
355 359Right-handed 310
Helix 45
45
B
361 376Right-handed alpha
Helix 46
46
B
416 423Right-handed alpha
Helix 47
47
B
439 444Right-handed alpha
Helix 48
48
B
470 501Right-handed alpha
Helix 49
49
B
524 531Right-handed alpha
Helix 50
50
B
540 570Right-handed alpha
Helix 51
51
B
580 608Right-handed alpha
Helix 52
52
B
630 636Right-handed alpha
Helix 53
53
B
638 640Right-handed 310
Helix 54
54
B
645 657Right-handed 310
Helix 55
55
B
659 674Right-handed alpha
Helix 56
56
B
739 754Right-handed alpha
Helix 57
57
B
757 773Right-handed alpha
Helix 58
58
B
776 779Right-handed alpha
Helix 59
59
B
789 792Right-handed 310
Helix 60
60
B
803 817Right-handed alpha
Helix 61
61
B
856 864Right-handed alpha
Helix 62
62
B
868 875Right-handed alpha
Helix 63
63
B
877 886Right-handed alpha
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There are 11 sheets in PDB entry 1WAF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
4 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
57 61anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
110 117parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
145 151anti-parallel
Strand 5
A
186 191parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 689first strand
Strand 2
A
407 412anti-parallel
Strand 3
A
624 628anti-parallel
Strand 4
A
617 621anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 728first strand
Strand 2
A
707 712anti-parallel
Strand 3
A
700 704anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
5 11anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
57 61anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 191first strand
Strand 2
B
145 151parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
112 117anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
683 685first strand
Strand 2
B
407 412anti-parallel
Strand 3
B
624 628anti-parallel
Strand 4
B
617 621anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 728first strand
Strand 2
B
708 715anti-parallel
Strand 3
B
687 689anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
700 704first strand
Strand 2
B
707 710anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il