Analysis of interatomic Contacts of Structural Units in PDB entry:
1WAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WAM entry

There is 1 chain in PDB entry 1WAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3VAL 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1WAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
39 42Right-handed 310
Helix 3
3
A
66 75Right-handed alpha
Helix 4
4
A
100 108Right-handed alpha
Helix 5
5
A
113 123Right-handed alpha
Helix 6
6
A
144 152Right-handed alpha
Helix 7
7
A
152 161Right-handed alpha
Helix 8
8
A
196 206Right-handed alpha
Helix 9
9
A
220 227Right-handed 310
Helix 10
10
A
235 240Right-handed alpha
Helix 11
11
A
285 288Right-handed 310
Helix 12
12
A
318 333Right-handed alpha
Helix 13
13
A
341 346Right-handed alpha
Helix 14
14
A
351 372Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1WAM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
28 32parallel
Strand 3
A
5 9parallel
Strand 4
A
229 232parallel
Strand 5
A
338 340parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
53 55anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
190 194anti-parallel
Strand 3
A
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
268 271parallel
Strand 4
A
280 283anti-parallel
Strand 5
A
295 305anti-parallel
Strand 6
A
249 260anti-parallel
Strand 7
A
314 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il