Analysis of interatomic Contacts of Structural Units in PDB entry:
1WBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WBF entry

There are 2 chains in PDB entry 1WBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1GLY 237
B
 LYS 1GLY 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1WBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 106Right-handed 310
Helix 2
2
A
194 197Right-handed alpha
Helix 3
3
A
213 215Right-handed 310
Helix 4
4
B
104 106Right-handed 310
Helix 5
5
B
112 114Right-handed 310
Helix 6
6
B
194 197Right-handed alpha
Helix 7
7
B
213 215Right-handed 310
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There are 4 sheets in PDB entry 1WBF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
225 234anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
184 191anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
202 210anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
118 124anti-parallel
Strand 6
A
135 141anti-parallel
Strand 7
A
148 152anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
225 234anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
160 167anti-parallel
Strand 5
B
172 179anti-parallel
Strand 6
B
184 191anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
202 210anti-parallel
Strand 4
B
87 95anti-parallel
Strand 5
B
118 124anti-parallel
Strand 6
B
136 141anti-parallel
Strand 7
B
148 151anti-parallel
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