Analysis of interatomic Contacts of Structural Units in PDB entry:
1WC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WC7 entry

There are 4 chains in PDB entry 1WC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1CYS 214
B
GLU 1ASP 214
H
GLU 1ASP 214
L
ASP 1GLU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1WC7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
79 83Right-handed 310
Helix 2
2
A
121 127Right-handed alpha
Helix 3
3
A
182 187Right-handed alpha
Helix 4
4
B
28 30Right-handed 310
Helix 5
5
B
52 54Right-handed 310
Helix 6
6
B
60 64Right-handed 310
Helix 7
7
B
83 87Right-handed 310
Helix 8
8
H
28 30Right-handed 310
Helix 9
9
H
52 54Right-handed 310
Helix 10
10
H
83 87Right-handed 310
Helix 11
11
H
156 158Right-handed 310
Helix 12
12
L
79 83Right-handed 310
Helix 13
13
L
121 126Right-handed alpha
Helix 14
14
L
182 188Right-handed alpha
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There are 21 sheets in PDB entry 1WC7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF, HA, HB, HC, HD, HE, HF, LA, LB, LC, LD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 13first strand
Strand 2
A
102 106parallel
Strand 3
A
84 89anti-parallel
Strand 4
A
34 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 115first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
173 176anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 132first strand
Strand 2
A
178 180anti-parallel
Strand 3
A
159 160anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 155first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
205 208anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 5first strand
Strand 2
B
23 25anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
107 111parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 49anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 20first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
67 72anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 124first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
163 165anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 124first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
169 170anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 154first strand
Strand 2
B
194 199anti-parallel
Strand 3
B
204 209anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 5first strand
Strand 2
H
23 25anti-parallel
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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 97anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 3 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
18 20first strand
Strand 2
H
79 82anti-parallel
Strand 3
H
67 70anti-parallel
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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in HF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 199anti-parallel
Strand 3
H
204 209anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 89anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
131 137anti-parallel
Strand 3
L
178 180anti-parallel
Strand 4
L
159 160anti-parallel
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There are 3 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
144 150first strand
Strand 2
L
191 198anti-parallel
Strand 3
L
205 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il