Analysis of interatomic Contacts of Structural Units in PDB entry:
1WCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WCD entry

There is 1 chain in PDB entry 1WCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 ILE 11ASP 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1WCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
J
13 20Right-handed alpha
Helix 2
2
J
21 24Right-handed 310
Helix 3
3
J
91 94Right-handed 310
Helix 4
4
J
132 136Right-handed 310
Helix 5
5
J
143 147Right-handed 310
Helix 6
6
J
150 152Right-handed 310
Helix 7
7
J
297 301Right-handed 310
Helix 8
8
J
378 382Right-handed 310
Helix 9
9
J
393 404Right-handed alpha
Helix 10
10
J
416 423Right-handed alpha
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There are 6 sheets in PDB entry 1WCD. Click on sheet of interest to get list of strands forming it: JA, JB, JC, JD, JE, JF,

There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
37 48first strand
Strand 2
J
362 375anti-parallel
Strand 3
J
96 110anti-parallel
Strand 4
J
178 179anti-parallel
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There are 5 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
37 48first strand
Strand 2
J
362 375anti-parallel
Strand 3
J
96 110anti-parallel
Strand 4
J
164 167anti-parallel
Strand 5
J
413 415anti-parallel
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There are 6 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
80 87first strand
Strand 2
J
67 74anti-parallel
Strand 3
J
55 59anti-parallel
Strand 4
J
349 355anti-parallel
Strand 5
J
123 129anti-parallel
Strand 6
J
154 159anti-parallel
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There are 2 strands in JD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
182 183first strand
Strand 2
J
196 197anti-parallel
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There are 4 strands in JE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
204 218first strand
Strand 2
J
325 337anti-parallel
Strand 3
J
240 249anti-parallel
Strand 4
J
288 293anti-parallel
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There are 4 strands in JF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
225 236first strand
Strand 2
J
305 314anti-parallel
Strand 3
J
255 265anti-parallel
Strand 4
J
270 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il