Analysis of interatomic Contacts of Structural Units in PDB entry:
1WD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WD5 entry

There is 1 chain in PDB entry 1WD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 1WD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
32 46Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
87 113Right-handed alpha
Helix 6
6
A
133 145Right-handed alpha
Helix 7
7
A
159 168Right-handed alpha
Helix 8
8
A
183 188Right-handed 310
Helix 9
9
A
195 205Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1WD5. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
26 29parallel
Strand 3
A
122 126parallel
Strand 4
A
150 157parallel
Strand 5
A
171 176parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
76 78anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il