Analysis of interatomic Contacts of Structural Units in PDB entry:
1WD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WD7 entry

There are 2 chains in PDB entry 1WD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8ALA 261
B
 ASP 7ALA 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
48 58Right-handed alpha
Helix 3
3
A
67 81Right-handed alpha
Helix 4
4
A
85 91Right-handed alpha
Helix 5
5
A
98 108Right-handed alpha
Helix 6
6
A
119 127Right-handed 310
Helix 7
7
A
143 153Right-handed alpha
Helix 8
8
A
168 181Right-handed alpha
Helix 9
9
A
191 202Right-handed alpha
Helix 10
10
A
204 214Right-handed alpha
Helix 11
11
A
222 232Right-handed alpha
Helix 12
12
A
244 261Right-handed alpha
Helix 13
13
B
18 29Right-handed alpha
Helix 14
14
B
48 58Right-handed alpha
Helix 15
15
B
67 81Right-handed alpha
Helix 16
16
B
85 91Right-handed alpha
Helix 17
17
B
98 108Right-handed alpha
Helix 18
18
B
119 127Right-handed 310
Helix 19
19
B
143 153Right-handed alpha
Helix 20
20
B
168 181Right-handed alpha
Helix 21
21
B
191 202Right-handed alpha
Helix 22
22
B
204 212Right-handed alpha
Helix 23
23
B
222 232Right-handed alpha
Helix 24
24
B
244 259Right-handed alpha
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There are 6 sheets in PDB entry 1WD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
10 13parallel
Strand 3
A
186 189parallel
Strand 4
A
217 221parallel
Strand 5
A
238 240parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
163 164anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
93 96parallel
Strand 3
A
62 65parallel
Strand 4
A
132 137parallel
Strand 5
A
155 160parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
10 13parallel
Strand 3
B
186 189parallel
Strand 4
B
217 221parallel
Strand 5
B
238 240parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
163 164anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
93 96parallel
Strand 3
B
62 65parallel
Strand 4
B
132 137parallel
Strand 5
B
155 160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il