Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDD entry

There are 6 chains in PDB entry 1WDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11THR 200
A
 ASP 202LEU 475
S
 GLN 2CYS 122
E
 GLY 12THR 200
E
 ASP 202LEU 475
W
 GLN 2CYS 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1WDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
49 61Right-handed alpha
Helix 3
3
A
69 75Right-handed 310
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
112 122Right-handed alpha
Helix 7
7
A
123 127Right-handed 310
Helix 8
8
A
141 146Right-handed alpha
Helix 9
9
A
154 163Right-handed alpha
Helix 10
10
A
181 195Right-handed alpha
Helix 11
11
A
213 233Right-handed alpha
Helix 12
12
A
246 261Right-handed alpha
Helix 13
13
A
269 273Right-handed alpha
Helix 14
14
A
273 288Right-handed alpha
Helix 15
15
A
297 303Right-handed alpha
Helix 16
16
A
310 322Right-handed alpha
Helix 17
17
A
338 351Right-handed alpha
Helix 18
18
A
357 361Right-handed 310
Helix 19
19
A
383 385Right-handed 310
Helix 20
20
A
386 395Right-handed alpha
Helix 21
21
A
403 408Right-handed alpha
Helix 22
22
A
412 433Right-handed alpha
Helix 23
23
A
436 450Right-handed alpha
Helix 24
24
A
452 463Right-handed alpha
Helix 25
25
S
22 36Right-handed alpha
Helix 26
26
S
78 93Right-handed alpha
Helix 27
27
E
20 25Right-handed alpha
Helix 28
28
E
49 61Right-handed alpha
Helix 29
29
E
69 75Right-handed 310
Helix 30
30
E
76 81Right-handed alpha
Helix 31
31
E
104 108Right-handed 310
Helix 32
32
E
112 122Right-handed alpha
Helix 33
33
E
123 127Right-handed 310
Helix 34
34
E
141 146Right-handed alpha
Helix 35
35
E
154 163Right-handed alpha
Helix 36
36
E
181 195Right-handed alpha
Helix 37
37
E
213 233Right-handed alpha
Helix 38
38
E
246 261Right-handed alpha
Helix 39
39
E
269 273Right-handed alpha
Helix 40
40
E
273 287Right-handed alpha
Helix 41
41
E
297 303Right-handed alpha
Helix 42
42
E
310 322Right-handed alpha
Helix 43
43
E
338 351Right-handed alpha
Helix 44
44
E
357 361Right-handed 310
Helix 45
45
E
383 385Right-handed 310
Helix 46
46
E
386 395Right-handed alpha
Helix 47
47
E
403 408Right-handed alpha
Helix 48
48
E
412 434Right-handed alpha
Helix 49
49
E
436 450Right-handed alpha
Helix 50
50
E
452 463Right-handed alpha
Helix 51
51
W
22 36Right-handed alpha
Helix 52
52
W
78 93Right-handed alpha
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There are 8 sheets in PDB entry 1WDD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
97 103anti-parallel
Strand 3
A
36 44anti-parallel
Strand 4
A
130 139anti-parallel
Strand 5
A
308 309parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
399 401parallel
Strand 3
A
375 379parallel
Strand 4
A
325 327parallel
Strand 5
A
290 294parallel
Strand 6
A
264 268parallel
Strand 7
A
237 241parallel
Strand 8
A
199 201parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
366 367anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
67 69first strand
Strand 2
S
39 45anti-parallel
Strand 3
S
97 104anti-parallel
Strand 4
S
109 117anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
97 103anti-parallel
Strand 3
E
36 44anti-parallel
Strand 4
E
130 139anti-parallel
Strand 5
E
308 309parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 171first strand
Strand 2
E
399 401parallel
Strand 3
E
375 379parallel
Strand 4
E
325 327parallel
Strand 5
E
290 294parallel
Strand 6
E
264 268parallel
Strand 7
E
237 241parallel
Strand 8
E
199 201parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
353 354first strand
Strand 2
E
366 367anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
67 69first strand
Strand 2
W
39 45anti-parallel
Strand 3
W
97 104anti-parallel
Strand 4
W
109 117anti-parallel
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