Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDE entry

There is 1 chain in PDB entry 1WDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6VAL 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1WDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
47 58Right-handed alpha
Helix 3
3
A
66 72Right-handed alpha
Helix 4
4
A
73 78Right-handed alpha
Helix 5
5
A
99 110Right-handed alpha
Helix 6
6
A
121 131Right-handed alpha
Helix 7
7
A
133 135Right-handed 310
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
152 165Right-handed alpha
Helix 10
10
A
183 203Right-handed alpha
Helix 11
11
A
207 211Right-handed 310
Helix 12
12
A
219 223Right-handed 310
Helix 13
13
A
231 237Right-handed alpha
Helix 14
14
A
254 265Right-handed alpha
Helix 15
15
A
276 288Right-handed alpha
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There are 2 sheets in PDB entry 1WDE. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
35 39parallel
Strand 3
A
85 90parallel
Strand 4
A
9 14parallel
Strand 5
A
113 117parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 143first strand
Strand 2
A
168 173parallel
Strand 3
A
246 249anti-parallel
Strand 4
A
213 217anti-parallel
Strand 5
A
225 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il