Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDI entry

There is 1 chain in PDB entry 1WDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1WDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed 310
Helix 2
2
A
12 16Right-handed 310
Helix 3
3
A
23 26Right-handed 310
Helix 4
4
A
47 52Right-handed alpha
Helix 5
5
A
184 189Right-handed 310
Helix 6
6
A
190 200Right-handed alpha
Helix 7
7
A
212 216Right-handed 310
Helix 8
8
A
236 249Right-handed alpha
Helix 9
9
A
257 267Right-handed alpha
Helix 10
10
A
306 317Right-handed alpha
Helix 11
11
A
317 331Right-handed alpha
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There are 4 sheets in PDB entry 1WDI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
341 345parallel
Strand 4
A
296 300anti-parallel
Strand 5
A
253 256parallel
Strand 6
A
57 65parallel
Strand 7
A
203 211parallel
Strand 8
A
231 235anti-parallel
Strand 9
A
277 281anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
79 84anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
119 126anti-parallel
Strand 3
A
146 148anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
273 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il