Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDJ entry

There are 3 chains in PDB entry 1WDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TRP 187
B
 LEU 36TRP 187
C
 PRO 2TRP 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1WDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
42 64Right-handed alpha
Helix 3
3
A
92 97Right-handed alpha
Helix 4
4
A
99 105Right-handed alpha
Helix 5
5
A
123 137Right-handed alpha
Helix 6
6
A
184 187Right-handed 310
Helix 7
7
B
42 64Right-handed alpha
Helix 8
8
B
92 97Right-handed alpha
Helix 9
9
B
99 105Right-handed alpha
Helix 10
10
B
123 137Right-handed alpha
Helix 11
11
B
184 187Right-handed 310
Helix 12
12
C
12 23Right-handed alpha
Helix 13
13
C
42 64Right-handed alpha
Helix 14
14
C
92 98Right-handed alpha
Helix 15
15
C
99 105Right-handed alpha
Helix 16
16
C
123 137Right-handed alpha
Helix 17
17
C
184 187Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 1WDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
26 30anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
151 155anti-parallel
Strand 6
A
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
113 117anti-parallel
Strand 4
B
141 146parallel
Strand 5
B
151 155anti-parallel
Strand 6
B
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
36 40anti-parallel
Strand 3
C
26 30anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
87 91anti-parallel
Strand 3
C
113 117anti-parallel
Strand 4
C
141 146parallel
Strand 5
C
151 155anti-parallel
Strand 6
C
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 76first strand
Strand 2
C
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
180 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il