Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1WDK entry

There are 4 chains in PDB entry 1WDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 715
B	MET 1	GLY 715
C	SER 2	VAL 391
D	SER 2	VAL 391

There are122 helices in PDB entry 1WDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	33	50	Right-handed alpha
Helix 2	2	A	70	78	Right-handed alpha
Helix 3	3	A	81	101	Right-handed alpha
Helix 4	4	A	116	124	Right-handed alpha
Helix 5	5	A	138	144	Right-handed 310
Helix 6	6	A	150	160	Right-handed alpha
Helix 7	7	A	160	171	Right-handed alpha
Helix 8	8	A	176	182	Right-handed alpha
Helix 9	9	A	190	192	Right-handed 310
Helix 10	10	A	193	207	Right-handed alpha
Helix 11	11	A	211	217	Right-handed alpha
Helix 12	12	A	218	221	Right-handed 310
Helix 13	13	A	226	246	Right-handed alpha
Helix 14	14	A	249	263	Right-handed alpha
Helix 15	15	A	266	283	Right-handed alpha
Helix 16	16	A	284	309	Right-handed alpha
Helix 17	17	A	322	336	Right-handed alpha
Helix 18	18	A	346	366	Right-handed alpha
Helix 19	19	A	371	381	Right-handed alpha
Helix 20	20	A	390	394	Right-handed 310
Helix 21	21	A	404	417	Right-handed alpha
Helix 22	22	A	433	438	Right-handed alpha
Helix 23	23	A	439	441	Right-handed 310
Helix 24	24	A	443	445	Right-handed 310
Helix 25	25	A	471	485	Right-handed alpha
Helix 26	26	A	499	517	Right-handed alpha
Helix 27	27	A	520	532	Right-handed alpha
Helix 28	28	A	536	545	Right-handed alpha
Helix 29	29	A	545	560	Right-handed alpha
Helix 30	30	A	560	565	Right-handed alpha
Helix 31	31	A	570	578	Right-handed alpha
Helix 32	32	A	606	613	Right-handed alpha
Helix 33	33	A	614	616	Right-handed 310
Helix 34	34	A	623	645	Right-handed alpha
Helix 35	35	A	650	662	Right-handed alpha
Helix 36	36	A	665	669	Right-handed 310
Helix 37	37	A	670	679	Right-handed alpha
Helix 38	38	A	679	690	Right-handed alpha
Helix 39	39	A	691	698	Right-handed 310
Helix 40	40	A	700	709	Right-handed alpha
Helix 41	41	B	33	50	Right-handed alpha
Helix 42	42	B	70	78	Right-handed alpha
Helix 43	43	B	81	101	Right-handed alpha
Helix 44	44	B	116	124	Right-handed alpha
Helix 45	45	B	138	144	Right-handed 310
Helix 46	46	B	150	160	Right-handed alpha
Helix 47	47	B	160	171	Right-handed alpha
Helix 48	48	B	176	182	Right-handed alpha
Helix 49	49	B	190	192	Right-handed 310
Helix 50	50	B	193	207	Right-handed alpha
Helix 51	51	B	211	217	Right-handed alpha
Helix 52	52	B	218	221	Right-handed 310
Helix 53	53	B	226	246	Right-handed alpha
Helix 54	54	B	249	263	Right-handed alpha
Helix 55	55	B	266	283	Right-handed alpha
Helix 56	56	B	284	309	Right-handed alpha
Helix 57	57	B	322	336	Right-handed alpha
Helix 58	58	B	346	366	Right-handed alpha
Helix 59	59	B	371	381	Right-handed alpha
Helix 60	60	B	390	394	Right-handed 310
Helix 61	61	B	404	417	Right-handed alpha
Helix 62	62	B	433	438	Right-handed alpha
Helix 63	63	B	439	441	Right-handed 310
Helix 64	64	B	443	445	Right-handed 310
Helix 65	65	B	471	485	Right-handed alpha
Helix 66	66	B	499	517	Right-handed alpha
Helix 67	67	B	520	532	Right-handed alpha
Helix 68	68	B	536	545	Right-handed alpha
Helix 69	69	B	545	560	Right-handed alpha
Helix 70	70	B	560	565	Right-handed alpha
Helix 71	71	B	570	578	Right-handed alpha
Helix 72	72	B	606	613	Right-handed alpha
Helix 73	73	B	614	616	Right-handed 310
Helix 74	74	B	623	645	Right-handed alpha
Helix 75	75	B	650	662	Right-handed alpha
Helix 76	76	B	665	669	Right-handed 310
Helix 77	77	B	670	679	Right-handed alpha
Helix 78	78	B	679	690	Right-handed alpha
Helix 79	79	B	691	698	Right-handed 310
Helix 80	80	B	700	709	Right-handed alpha
Helix 81	81	C	30	46	Right-handed alpha
Helix 82	82	C	50	52	Right-handed 310
Helix 83	83	C	65	69	Right-handed 310
Helix 84	84	C	71	78	Right-handed alpha
Helix 85	85	C	93	95	Right-handed 310
Helix 86	86	C	96	111	Right-handed alpha
Helix 87	87	C	137	143	Right-handed 310
Helix 88	88	C	145	149	Right-handed 310
Helix 89	89	C	150	163	Right-handed alpha
Helix 90	90	C	165	186	Right-handed alpha
Helix 91	91	C	219	225	Right-handed alpha
Helix 92	92	C	238	242	Right-handed 310
Helix 93	93	C	257	263	Right-handed alpha
Helix 94	94	C	280	286	Right-handed 310
Helix 95	95	C	287	300	Right-handed alpha
Helix 96	96	C	302	306	Right-handed 310
Helix 97	97	C	315	326	Right-handed alpha
Helix 98	98	C	328	330	Right-handed 310
Helix 99	99	C	331	336	Right-handed alpha
Helix 100	100	C	341	346	Right-handed alpha
Helix 101	101	C	348	367	Right-handed alpha
Helix 102	102	D	30	46	Right-handed alpha
Helix 103	103	D	50	52	Right-handed 310
Helix 104	104	D	65	69	Right-handed 310
Helix 105	105	D	71	78	Right-handed alpha
Helix 106	106	D	93	95	Right-handed 310
Helix 107	107	D	96	111	Right-handed alpha
Helix 108	108	D	137	143	Right-handed 310
Helix 109	109	D	145	149	Right-handed 310
Helix 110	110	D	150	163	Right-handed alpha
Helix 111	111	D	165	186	Right-handed alpha
Helix 112	112	D	219	225	Right-handed alpha
Helix 113	113	D	238	242	Right-handed 310
Helix 114	114	D	257	263	Right-handed alpha
Helix 115	115	D	280	286	Right-handed 310
Helix 116	116	D	287	300	Right-handed alpha
Helix 117	117	D	302	306	Right-handed 310
Helix 118	118	D	315	326	Right-handed alpha
Helix 119	119	D	328	330	Right-handed 310
Helix 120	120	D	331	336	Right-handed alpha
Helix 121	121	D	341	346	Right-handed alpha
Helix 122	122	D	348	367	Right-handed alpha

There are 11 sheets in PDB entry 1WDK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	8	12	anti-parallel
Strand 3	A	17	22	anti-parallel
Strand 4	A	55	60	parallel
Strand 5	A	106	110	parallel
Strand 6	A	127	131	parallel
Strand 7	A	187	189	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	135	137	parallel
Strand 3	A	174	175	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	340	343	parallel
Strand 3	A	317	320	parallel
Strand 4	A	396	399	parallel
Strand 5	A	424	427	parallel
Strand 6	A	447	451	parallel
Strand 7	A	461	466	anti-parallel
Strand 8	A	488	493	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	17	22	anti-parallel
Strand 4	B	55	60	parallel
Strand 5	B	106	110	parallel
Strand 6	B	127	131	parallel
Strand 7	B	187	189	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	135	137	parallel
Strand 3	B	174	175	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	340	343	parallel
Strand 3	B	317	320	parallel
Strand 4	B	396	399	parallel
Strand 5	B	424	427	parallel
Strand 6	B	447	451	parallel
Strand 7	B	461	466	anti-parallel
Strand 8	B	488	493	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	602	603	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	246	256	anti-parallel
Strand 3	C	116	124	anti-parallel
Strand 4	C	54	60	parallel
Strand 5	C	87	92	parallel
Strand 6	D	87	92	anti-parallel
Strand 7	D	54	60	parallel
Strand 8	D	116	124	parallel
Strand 9	D	246	256	anti-parallel
Strand 10	D	19	20	anti-parallel

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There are 18 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	311	first strand
Strand 2	C	371	378	parallel
Strand 3	C	382	389	anti-parallel
Strand 4	C	269	278	anti-parallel
Strand 5	C	8	15	anti-parallel
Strand 6	C	246	256	anti-parallel
Strand 7	C	116	124	anti-parallel
Strand 8	C	54	60	parallel
Strand 9	C	87	92	parallel
Strand 10	D	87	92	anti-parallel
Strand 11	D	54	60	parallel
Strand 12	D	116	124	parallel
Strand 13	D	246	256	anti-parallel
Strand 14	D	8	15	anti-parallel
Strand 15	D	269	278	anti-parallel
Strand 16	D	382	389	anti-parallel
Strand 17	D	371	378	anti-parallel
Strand 18	D	308	311	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	205	208	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1WDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDK