Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDM entry

There are 4 chains in PDB entry 1WDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 715
B
 MET 1GLY 715
C
 SER 2VAL 391
D
 SER 2VAL 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 1WDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 50Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
81 101Right-handed alpha
Helix 4
4
A
116 125Right-handed alpha
Helix 5
5
A
140 144Right-handed 310
Helix 6
6
A
150 160Right-handed alpha
Helix 7
7
A
160 169Right-handed alpha
Helix 8
8
A
176 182Right-handed alpha
Helix 9
9
A
193 207Right-handed alpha
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
218 221Right-handed 310
Helix 12
12
A
226 246Right-handed alpha
Helix 13
13
A
249 262Right-handed alpha
Helix 14
14
A
266 284Right-handed alpha
Helix 15
15
A
286 309Right-handed alpha
Helix 16
16
A
322 336Right-handed alpha
Helix 17
17
A
346 366Right-handed alpha
Helix 18
18
A
371 381Right-handed alpha
Helix 19
19
A
390 394Right-handed 310
Helix 20
20
A
404 416Right-handed alpha
Helix 21
21
A
433 438Right-handed alpha
Helix 22
22
A
439 441Right-handed 310
Helix 23
23
A
443 445Right-handed 310
Helix 24
24
A
471 485Right-handed alpha
Helix 25
25
A
499 516Right-handed alpha
Helix 26
26
A
520 532Right-handed alpha
Helix 27
27
A
536 545Right-handed alpha
Helix 28
28
A
545 560Right-handed alpha
Helix 29
29
A
560 565Right-handed alpha
Helix 30
30
A
570 578Right-handed alpha
Helix 31
31
A
606 613Right-handed alpha
Helix 32
32
A
623 645Right-handed alpha
Helix 33
33
A
650 662Right-handed alpha
Helix 34
34
A
665 669Right-handed 310
Helix 35
35
A
670 679Right-handed alpha
Helix 36
36
A
679 690Right-handed alpha
Helix 37
37
A
691 698Right-handed 310
Helix 38
38
A
700 709Right-handed alpha
Helix 39
39
B
33 50Right-handed alpha
Helix 40
40
B
70 78Right-handed alpha
Helix 41
41
B
81 101Right-handed alpha
Helix 42
42
B
116 125Right-handed alpha
Helix 43
43
B
140 144Right-handed 310
Helix 44
44
B
150 160Right-handed alpha
Helix 45
45
B
160 169Right-handed alpha
Helix 46
46
B
176 182Right-handed alpha
Helix 47
47
B
193 207Right-handed alpha
Helix 48
48
B
211 217Right-handed alpha
Helix 49
49
B
218 221Right-handed 310
Helix 50
50
B
226 246Right-handed alpha
Helix 51
51
B
249 262Right-handed alpha
Helix 52
52
B
266 284Right-handed alpha
Helix 53
53
B
286 309Right-handed alpha
Helix 54
54
B
322 336Right-handed alpha
Helix 55
55
B
346 366Right-handed alpha
Helix 56
56
B
371 381Right-handed alpha
Helix 57
57
B
390 394Right-handed 310
Helix 58
58
B
404 416Right-handed alpha
Helix 59
59
B
433 438Right-handed alpha
Helix 60
60
B
439 441Right-handed 310
Helix 61
61
B
443 445Right-handed 310
Helix 62
62
B
471 485Right-handed alpha
Helix 63
63
B
499 516Right-handed alpha
Helix 64
64
B
520 532Right-handed alpha
Helix 65
65
B
536 545Right-handed alpha
Helix 66
66
B
545 560Right-handed alpha
Helix 67
67
B
560 565Right-handed alpha
Helix 68
68
B
570 578Right-handed alpha
Helix 69
69
B
606 613Right-handed alpha
Helix 70
70
B
623 645Right-handed alpha
Helix 71
71
B
650 662Right-handed alpha
Helix 72
72
B
665 669Right-handed 310
Helix 73
73
B
670 679Right-handed alpha
Helix 74
74
B
679 690Right-handed alpha
Helix 75
75
B
691 698Right-handed 310
Helix 76
76
B
700 709Right-handed alpha
Helix 77
77
C
30 46Right-handed alpha
Helix 78
78
C
50 52Right-handed 310
Helix 79
79
C
65 69Right-handed 310
Helix 80
80
C
71 78Right-handed alpha
Helix 81
81
C
93 95Right-handed 310
Helix 82
82
C
96 111Right-handed alpha
Helix 83
83
C
139 144Right-handed alpha
Helix 84
84
C
145 149Right-handed 310
Helix 85
85
C
150 162Right-handed alpha
Helix 86
86
C
165 186Right-handed alpha
Helix 87
87
C
219 226Right-handed alpha
Helix 88
88
C
257 264Right-handed alpha
Helix 89
89
C
280 286Right-handed 310
Helix 90
90
C
287 300Right-handed alpha
Helix 91
91
C
315 326Right-handed alpha
Helix 92
92
C
328 330Right-handed 310
Helix 93
93
C
331 336Right-handed alpha
Helix 94
94
C
341 346Right-handed alpha
Helix 95
95
C
348 368Right-handed alpha
Helix 96
96
D
30 46Right-handed alpha
Helix 97
97
D
50 52Right-handed 310
Helix 98
98
D
65 69Right-handed 310
Helix 99
99
D
71 78Right-handed alpha
Helix 100
100
D
93 95Right-handed 310
Helix 101
101
D
96 112Right-handed alpha
Helix 102
102
D
139 144Right-handed alpha
Helix 103
103
D
145 149Right-handed 310
Helix 104
104
D
150 162Right-handed alpha
Helix 105
105
D
165 186Right-handed alpha
Helix 106
106
D
219 226Right-handed alpha
Helix 107
107
D
257 264Right-handed alpha
Helix 108
108
D
280 286Right-handed 310
Helix 109
109
D
287 300Right-handed alpha
Helix 110
110
D
315 326Right-handed alpha
Helix 111
111
D
328 330Right-handed 310
Helix 112
112
D
331 336Right-handed alpha
Helix 113
113
D
341 346Right-handed alpha
Helix 114
114
D
348 368Right-handed alpha
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There are 12 sheets in PDB entry 1WDM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
8 12anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
55 60parallel
Strand 5
A
106 110parallel
Strand 6
A
127 131parallel
Strand 7
A
187 189parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
135 137parallel
Strand 3
A
173 175anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
340 343parallel
Strand 3
A
317 320parallel
Strand 4
A
396 399parallel
Strand 5
A
424 427parallel
Strand 6
A
447 452parallel
Strand 7
A
461 466anti-parallel
Strand 8
A
488 493parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
8 12anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
55 60parallel
Strand 5
B
106 110parallel
Strand 6
B
127 131parallel
Strand 7
B
187 189parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
135 137parallel
Strand 3
B
173 175anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 385first strand
Strand 2
B
340 343parallel
Strand 3
B
317 320parallel
Strand 4
B
396 399parallel
Strand 5
B
424 427parallel
Strand 6
B
447 452parallel
Strand 7
B
461 466anti-parallel
Strand 8
B
488 493parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
602 603anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
246 256anti-parallel
Strand 3
C
116 124anti-parallel
Strand 4
C
54 60parallel
Strand 5
C
87 92parallel
Strand 6
D
87 92anti-parallel
Strand 7
D
54 60parallel
Strand 8
D
116 124parallel
Strand 9
D
246 256anti-parallel
Strand 10
D
19 20anti-parallel
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There are 15 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 270first strand
Strand 2
C
8 15anti-parallel
Strand 3
C
246 256anti-parallel
Strand 4
C
116 124anti-parallel
Strand 5
C
54 60parallel
Strand 6
C
87 92parallel
Strand 7
D
87 92anti-parallel
Strand 8
D
54 60parallel
Strand 9
D
116 124parallel
Strand 10
D
246 256anti-parallel
Strand 11
D
8 15anti-parallel
Strand 12
D
269 278anti-parallel
Strand 13
D
382 389anti-parallel
Strand 14
D
371 378anti-parallel
Strand 15
D
308 311parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 199first strand
Strand 2
C
205 208anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
382 389anti-parallel
Strand 3
C
371 378anti-parallel
Strand 4
C
308 311parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
196 199first strand
Strand 2
D
205 208anti-parallel
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