Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDU entry

There are 2 chains in PDB entry 1WDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21LYS 248
B
 PRO 22LYS 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1WDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 48Right-handed alpha
Helix 2
2
A
133 146Right-handed alpha
Helix 3
3
A
162 166Right-handed 310
Helix 4
4
A
171 185Right-handed alpha
Helix 5
5
A
217 220Right-handed 310
Helix 6
6
B
33 48Right-handed alpha
Helix 7
7
B
132 148Right-handed alpha
Helix 8
8
B
162 166Right-handed 310
Helix 9
9
B
171 185Right-handed alpha
Helix 10
10
B
218 221Right-handed 310
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There are 6 sheets in PDB entry 1WDU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
23 29parallel
Strand 5
A
240 244anti-parallel
Strand 6
A
223 228anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
152 157parallel
Strand 5
A
211 215anti-parallel
Strand 6
A
187 188anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
207 208anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
86 90anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
23 29parallel
Strand 5
B
240 244anti-parallel
Strand 6
B
223 228anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
108 114anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
152 157parallel
Strand 5
B
211 216anti-parallel
Strand 6
B
186 188anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
204 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il