Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1WHF entry
There are 11 chains in PDB entry 1WHF
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
ALA 1 | LEU 5 |
A
|
VAL 8 | LEU 13 |
A
|
ARG 15 | ARG 15 |
A
|
CYS 17 | LEU 18 |
A
|
ALA 21 | LEU 24 |
A
|
ALA 27 | ARG 28 |
A
|
VAL 30 | PHE 31 |
A
|
ASP 33 | ALA 34 |
A
|
GLN 36 | ASP 38 |
A
|
PHE 40 | LYS 62 |
A
|
GLY 64 | ARG 86 |
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There are 3
helices in PDB entry 1WHF. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
A1 | A
| 13 |
18 | Right-handed alpha |
| Helix 2 |
A2 | A
| 20 |
30 | Right-handed alpha |
| Helix 3 |
A3 | A
| 34 |
41 | Right-handed alpha |
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There are
2 sheets in PDB entry 1WHF. Click on sheet of
interest to get list of strands forming it:
S1,
S2,
There are 2
strands in S1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 59 |
63 | first strand |
| Strand 2 |
A
| 68 |
72 | anti-parallel |
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There are 2
strands in S2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 76 |
77 | first strand |
| Strand 2 |
A
| 83 |
84 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il