Analysis of interatomic Contacts of Structural Units in PDB entry:
1WKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WKD entry

There is 1 chain in PDB entry 1WKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11PHE 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1WKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 61Right-handed alpha
Helix 2
2
A
71 76Right-handed alpha
Helix 3
3
A
80 86Right-handed alpha
Helix 4
4
A
89 93Right-handed alpha
Helix 5
5
A
105 111Right-handed alpha
Helix 6
6
A
137 147Right-handed alpha
Helix 7
7
A
165 188Right-handed alpha
Helix 8
8
A
190 195Right-handed alpha
Helix 9
9
A
208 221Right-handed alpha
Helix 10
10
A
236 250Right-handed alpha
Helix 11
11
A
265 274Right-handed alpha
Helix 12
12
A
283 290Right-handed alpha
Helix 13
13
A
305 307Right-handed 310
Helix 14
14
A
321 325Right-handed alpha
Helix 15
15
A
328 337Right-handed alpha
Helix 16
16
A
340 366Right-handed alpha
Helix 17
17
A
370 380Right-handed alpha
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There are 5 sheets in PDB entry 1WKD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
15 22anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
278 280parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
67 69parallel
Strand 3
A
99 101parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
121 123anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
197 202parallel
Strand 3
A
225 228parallel
Strand 4
A
256 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il