Analysis of interatomic Contacts of Structural Units in PDB entry:
1WKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WKP entry

There are 4 chains in PDB entry 1WKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6SER 168
B
 ARG 6GLU 167
C
 ARG 6GLU 167
D
 ARG 6GLU 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1WKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
13 18Right-handed alpha
Helix 3
3
A
44 48Right-handed 310
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
143 151Right-handed alpha
Helix 6
6
B
7 12Right-handed alpha
Helix 7
7
B
13 18Right-handed alpha
Helix 8
8
B
44 48Right-handed 310
Helix 9
9
B
98 102Right-handed 310
Helix 10
10
B
143 151Right-handed alpha
Helix 11
11
C
7 12Right-handed alpha
Helix 12
12
C
13 18Right-handed alpha
Helix 13
13
C
98 102Right-handed 310
Helix 14
14
C
143 151Right-handed alpha
Helix 15
15
D
7 12Right-handed alpha
Helix 16
16
D
13 18Right-handed alpha
Helix 17
17
D
44 48Right-handed 310
Helix 18
18
D
98 102Right-handed 310
Helix 19
19
D
143 151Right-handed alpha
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There are 8 sheets in PDB entry 1WKP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
53 56anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
158 164parallel
Strand 3
A
118 126anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
85 94anti-parallel
Strand 6
A
103 106anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
53 56anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
158 164parallel
Strand 3
B
118 126anti-parallel
Strand 4
B
64 71anti-parallel
Strand 5
B
85 94anti-parallel
Strand 6
B
103 106anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
28 32anti-parallel
Strand 3
C
53 56anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 43first strand
Strand 2
C
158 164parallel
Strand 3
C
118 126anti-parallel
Strand 4
C
64 71anti-parallel
Strand 5
C
85 94anti-parallel
Strand 6
C
103 106anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
28 32anti-parallel
Strand 3
D
53 56anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 43first strand
Strand 2
D
158 164parallel
Strand 3
D
118 126anti-parallel
Strand 4
D
64 71anti-parallel
Strand 5
D
85 94anti-parallel
Strand 6
D
103 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il