Analysis of interatomic Contacts of Structural Units in PDB entry:
1WKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WKU entry

There are 2 chains in PDB entry 1WKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42ALA 266
B
 ALA 42GLN 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 1WKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 60Right-handed alpha
Helix 2
2
A
61 63Right-handed 310
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
99 116Right-handed alpha
Helix 5
5
A
125 132Right-handed alpha
Helix 6
6
A
133 150Right-handed alpha
Helix 7
7
A
160 173Right-handed alpha
Helix 8
8
A
184 188Right-handed 310
Helix 9
9
A
190 201Right-handed alpha
Helix 10
10
A
206 210Right-handed 310
Helix 11
11
A
214 230Right-handed alpha
Helix 12
12
A
237 244Right-handed alpha
Helix 13
13
A
248 266Right-handed alpha
Helix 14
14
B
42 60Right-handed alpha
Helix 15
15
B
61 63Right-handed 310
Helix 16
16
B
76 88Right-handed alpha
Helix 17
17
B
99 116Right-handed alpha
Helix 18
18
B
125 131Right-handed alpha
Helix 19
19
B
133 150Right-handed alpha
Helix 20
20
B
160 173Right-handed alpha
Helix 21
21
B
184 188Right-handed 310
Helix 22
22
B
190 201Right-handed alpha
Helix 23
23
B
202 205Right-handed 310
Helix 24
24
B
206 210Right-handed 310
Helix 25
25
B
214 230Right-handed alpha
Helix 26
26
B
237 244Right-handed alpha
Helix 27
27
B
248 266Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1WKU. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
158 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
158 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il