Analysis of interatomic Contacts of Structural Units in PDB entry:
1WKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WKV entry

There are 2 chains in PDB entry 1WKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 383
B
 ALA 2GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1WKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 10Right-handed 310
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
21 32Right-handed alpha
Helix 4
4
A
39 42Right-handed 310
Helix 5
5
A
43 54Right-handed alpha
Helix 6
6
A
86 94Right-handed alpha
Helix 7
7
A
118 120Right-handed 310
Helix 8
8
A
127 139Right-handed alpha
Helix 9
9
A
153 167Right-handed alpha
Helix 10
10
A
180 190Right-handed alpha
Helix 11
11
A
203 205Right-handed 310
Helix 12
12
A
206 218Right-handed alpha
Helix 13
13
A
227 237Right-handed alpha
Helix 14
14
A
237 249Right-handed alpha
Helix 15
15
A
263 277Right-handed alpha
Helix 16
16
A
298 302Right-handed 310
Helix 17
17
A
304 309Right-handed alpha
Helix 18
18
A
319 335Right-handed alpha
Helix 19
19
A
339 355Right-handed alpha
Helix 20
20
A
370 373Right-handed 310
Helix 21
21
A
374 383Right-handed alpha
Helix 22
22
B
7 10Right-handed 310
Helix 23
23
B
11 16Right-handed alpha
Helix 24
24
B
21 32Right-handed alpha
Helix 25
25
B
39 42Right-handed 310
Helix 26
26
B
43 54Right-handed alpha
Helix 27
27
B
86 94Right-handed alpha
Helix 28
28
B
118 120Right-handed 310
Helix 29
29
B
127 137Right-handed alpha
Helix 30
30
B
153 167Right-handed alpha
Helix 31
31
B
180 190Right-handed alpha
Helix 32
32
B
203 205Right-handed 310
Helix 33
33
B
206 218Right-handed alpha
Helix 34
34
B
227 237Right-handed alpha
Helix 35
35
B
237 249Right-handed alpha
Helix 36
36
B
263 277Right-handed alpha
Helix 37
37
B
298 302Right-handed 310
Helix 38
38
B
304 309Right-handed alpha
Helix 39
39
B
319 335Right-handed alpha
Helix 40
40
B
339 355Right-handed alpha
Helix 41
41
B
370 373Right-handed 310
Helix 42
42
B
374 383Right-handed alpha
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There are 8 sheets in PDB entry 1WKV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
57 59anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
65 67anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
99 101parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
361 367parallel
Strand 5
B
253 258parallel
Strand 6
B
281 287parallel
Strand 7
B
314 318parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
281 287parallel
Strand 3
A
253 258parallel
Strand 4
A
361 367parallel
Strand 5
A
110 116parallel
Strand 6
A
99 101anti-parallel
Strand 7
B
83 84parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
170 176parallel
Strand 3
A
147 151parallel
Strand 4
A
220 221parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
57 59anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
65 67anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
170 176parallel
Strand 3
B
147 151parallel
Strand 4
B
220 221parallel
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