Analysis of interatomic Contacts of Structural Units in PDB entry:
1WME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WME entry

There is 1 chain in PDB entry 1WME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1ASN 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1WME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 8Right-handed alpha
Helix 2
2
A
9 18Right-handed alpha
Helix 3
3
A
67 78Right-handed alpha
Helix 4
4
A
110 121Right-handed alpha
Helix 5
5
A
139 152Right-handed alpha
Helix 6
6
A
189 197Right-handed 310
Helix 7
7
A
236 240Right-handed 310
Helix 8
8
A
253 275Right-handed alpha
Helix 9
9
A
281 293Right-handed alpha
Helix 10
10
A
311 317Right-handed alpha
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There are 4 sheets in PDB entry 1WME. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
91 96parallel
Strand 3
A
25 30parallel
Strand 4
A
125 128parallel
Strand 5
A
155 159parallel
Strand 6
A
180 185parallel
Strand 7
A
220 223parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
248 251anti-parallel
Strand 3
A
242 243anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 327first strand
Strand 2
A
426 433anti-parallel
Strand 3
A
345 350anti-parallel
Strand 4
A
399 404anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 339first strand
Strand 2
A
410 420anti-parallel
Strand 3
A
367 373anti-parallel
Strand 4
A
379 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il