Analysis of interatomic Contacts of Structural Units in PDB entry:
1WMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WMR entry

There are 2 chains in PDB entry 1WMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 16ASP 564
B
 ARG 16ASP 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1WMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 90Right-handed 310
Helix 2
2
A
280 284Right-handed 310
Helix 3
3
A
331 333Right-handed 310
Helix 4
4
A
424 428Right-handed 310
Helix 5
5
A
499 503Right-handed 310
Helix 6
6
A
553 558Right-handed alpha
Helix 7
7
B
78 90Right-handed 310
Helix 8
8
B
280 284Right-handed 310
Helix 9
9
B
288 292Right-handed 310
Helix 10
10
B
331 333Right-handed 310
Helix 11
11
B
424 428Right-handed 310
Helix 12
12
B
499 503Right-handed 310
Helix 13
13
B
556 558Right-handed 310
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There are 20 sheets in PDB entry 1WMR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
96 104anti-parallel
Strand 3
A
75 77anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
96 104anti-parallel
Strand 3
A
175 183parallel
Strand 4
A
152 158anti-parallel
Strand 5
A
123 126anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
49 50parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
134 136anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 13 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
216 219parallel
Strand 3
A
240 243parallel
Strand 4
A
261 265parallel
Strand 5
A
308 313parallel
Strand 6
A
335 345parallel
Strand 7
A
362 370parallel
Strand 8
A
382 391parallel
Strand 9
A
407 419parallel
Strand 10
A
453 472parallel
Strand 11
A
482 497parallel
Strand 12
A
523 533parallel
Strand 13
A
536 537anti-parallel
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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
222 225parallel
Strand 3
A
247 250parallel
Strand 4
A
269 271parallel
Strand 5
A
316 318parallel
Strand 6
A
335 345parallel
Strand 7
A
362 370parallel
Strand 8
A
382 391parallel
Strand 9
A
407 419parallel
Strand 10
A
453 472parallel
Strand 11
A
482 497parallel
Strand 12
A
523 533parallel
Strand 13
A
560 562parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
253 255parallel
Strand 3
A
299 302parallel
Strand 4
A
325 328parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
398 399parallel
Strand 3
A
432 434parallel
Strand 4
A
476 478parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
549 552parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
96 104anti-parallel
Strand 3
B
75 77anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
96 104anti-parallel
Strand 3
B
175 182parallel
Strand 4
B
152 158anti-parallel
Strand 5
B
123 126anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
49 51parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
108 113anti-parallel
Strand 4
B
140 145anti-parallel
Strand 5
B
134 137anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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There are 13 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
216 219parallel
Strand 3
B
240 243parallel
Strand 4
B
261 265parallel
Strand 5
B
308 313parallel
Strand 6
B
335 345parallel
Strand 7
B
362 370parallel
Strand 8
B
382 391parallel
Strand 9
B
407 417parallel
Strand 10
B
453 472parallel
Strand 11
B
482 497parallel
Strand 12
B
523 533parallel
Strand 13
B
536 537anti-parallel
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There are 13 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
222 225parallel
Strand 3
B
247 250parallel
Strand 4
B
269 271parallel
Strand 5
B
316 318parallel
Strand 6
B
335 345parallel
Strand 7
B
362 370parallel
Strand 8
B
382 391parallel
Strand 9
B
407 417parallel
Strand 10
B
453 472parallel
Strand 11
B
482 497parallel
Strand 12
B
523 533parallel
Strand 13
B
560 562parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
253 255parallel
Strand 3
B
299 302parallel
Strand 4
B
325 328parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 376first strand
Strand 2
B
398 399parallel
Strand 3
B
432 434parallel
Strand 4
B
476 478parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 509first strand
Strand 2
B
549 552parallel
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