Analysis of interatomic Contacts of Structural Units in PDB entry:
1WOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WOM entry

There are 2 chains in PDB entry 1WOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1VAL 269
B
 GLY 0VAL 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1WOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 9Right-handed alpha
Helix 2
2
A
30 35Right-handed 310
Helix 3
3
A
37 42Right-handed 310
Helix 4
4
A
66 69Right-handed 310
Helix 5
5
A
70 85Right-handed alpha
Helix 6
6
A
96 109Right-handed alpha
Helix 7
7
A
137 151Right-handed alpha
Helix 8
8
A
151 165Right-handed alpha
Helix 9
9
A
169 183Right-handed alpha
Helix 10
10
A
184 197Right-handed alpha
Helix 11
11
A
200 207Right-handed 310
Helix 12
12
A
223 234Right-handed alpha
Helix 13
13
A
248 253Right-handed alpha
Helix 14
14
A
253 269Right-handed alpha
Helix 15
15
B
1 9Right-handed alpha
Helix 16
16
B
30 35Right-handed 310
Helix 17
17
B
37 42Right-handed 310
Helix 18
18
B
58 63Right-handed 310
Helix 19
19
B
66 69Right-handed 310
Helix 20
20
B
70 85Right-handed alpha
Helix 21
21
B
96 109Right-handed alpha
Helix 22
22
B
137 151Right-handed alpha
Helix 23
23
B
151 165Right-handed alpha
Helix 24
24
B
169 181Right-handed alpha
Helix 25
25
B
184 197Right-handed alpha
Helix 26
26
B
201 207Right-handed 310
Helix 27
27
B
223 234Right-handed alpha
Helix 28
28
B
248 253Right-handed alpha
Helix 29
29
B
253 267Right-handed alpha
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There are 4 sheets in PDB entry 1WOM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
20 24parallel
Strand 4
A
90 95parallel
Strand 5
A
113 119parallel
Strand 6
A
211 217parallel
Strand 7
A
237 245parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
132 133anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
19 24parallel
Strand 4
B
90 95parallel
Strand 5
B
113 119parallel
Strand 6
B
211 217parallel
Strand 7
B
238 245parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
132 133anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il