Analysis of interatomic Contacts of Structural Units in PDB entry:
1WOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WOP entry

There is 1 chain in PDB entry 1WOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1WOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
115 125Right-handed alpha
Helix 5
5
A
150 156Right-handed alpha
Helix 6
6
A
157 159Right-handed 310
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
202 217Right-handed alpha
Helix 9
9
A
223 234Right-handed alpha
Helix 10
10
A
248 253Right-handed 310
Helix 11
11
A
254 258Right-handed 310
Helix 12
12
A
266 276Right-handed alpha
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There are 4 sheets in PDB entry 1WOP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 28anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
179 184anti-parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
141 147anti-parallel
Strand 5
A
44 47anti-parallel
Strand 6
A
220 221parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
93 103anti-parallel
Strand 3
A
106 111anti-parallel
Strand 4
A
52 57anti-parallel
Strand 5
A
133 136anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 286first strand
Strand 2
A
319 327anti-parallel
Strand 3
A
303 314anti-parallel
Strand 4
A
297 300anti-parallel
Strand 5
A
335 340anti-parallel
Strand 6
A
344 351anti-parallel
Strand 7
A
279 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il