Analysis of interatomic Contacts of Structural Units in PDB entry:
1WOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WOQ entry

There are 2 chains in PDB entry 1WOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 11HIS 263
B
 ASN 11HIS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1WOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 67Right-handed alpha
Helix 2
2
A
98 102Right-handed 310
Helix 3
3
A
105 115Right-handed alpha
Helix 4
4
A
123 134Right-handed alpha
Helix 5
5
A
168 171Right-handed 310
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
184 191Right-handed alpha
Helix 8
8
A
194 214Right-handed alpha
Helix 9
9
A
222 235Right-handed 310
Helix 10
10
A
249 263Right-handed alpha
Helix 11
11
B
50 67Right-handed alpha
Helix 12
12
B
98 102Right-handed 310
Helix 13
13
B
105 115Right-handed alpha
Helix 14
14
B
123 134Right-handed alpha
Helix 15
15
B
168 171Right-handed 310
Helix 16
16
B
179 184Right-handed alpha
Helix 17
17
B
184 191Right-handed alpha
Helix 18
18
B
194 214Right-handed alpha
Helix 19
19
B
224 235Right-handed 310
Helix 20
20
B
246 248Right-handed 310
Helix 21
21
B
249 263Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1WOQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 44first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
14 19anti-parallel
Strand 4
A
78 82parallel
Strand 5
A
118 122parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
90 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
153 159anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
217 221parallel
Strand 5
A
241 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
41 44anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
14 19anti-parallel
Strand 4
B
78 82parallel
Strand 5
B
118 122parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
90 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
153 159anti-parallel
Strand 3
B
143 149anti-parallel
Strand 4
B
217 221parallel
Strand 5
B
241 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
177 178anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il