Analysis of interatomic Contacts of Structural Units in PDB entry:
1WP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WP1 entry

There are 2 chains in PDB entry 1WP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1THR 456
B
 CYS 1GLN 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
46 60Right-handed alpha
Helix 4
4
A
60 83Right-handed alpha
Helix 5
5
A
130 198Right-handed alpha
Helix 6
6
A
202 239Right-handed alpha
Helix 7
7
A
266 272Right-handed alpha
Helix 8
8
A
272 295Right-handed alpha
Helix 9
9
A
312 316Right-handed 310
Helix 10
10
A
338 377Right-handed alpha
Helix 11
11
A
378 406Right-handed alpha
Helix 12
12
A
410 447Right-handed alpha
Helix 13
13
B
34 38Right-handed 310
Helix 14
14
B
39 44Right-handed alpha
Helix 15
15
B
46 58Right-handed alpha
Helix 16
16
B
60 80Right-handed alpha
Helix 17
17
B
136 198Right-handed alpha
Helix 18
18
B
202 239Right-handed alpha
Helix 19
19
B
264 266Right-handed 310
Helix 20
20
B
267 272Right-handed alpha
Helix 21
21
B
272 294Right-handed alpha
Helix 22
22
B
340 406Right-handed alpha
Helix 23
23
B
410 446Right-handed alpha
Helix 24
24
B
447 451Right-handed 310
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There are 2 sheets in PDB entry 1WP1. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
307 310anti-parallel
Strand 3
A
322 323anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
301 304anti-parallel
Strand 3
A
326 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il