Analysis of interatomic Contacts of Structural Units in PDB entry:
1WP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WP5 entry

There is 1 chain in PDB entry 1WP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1WP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 28Right-handed alpha
Helix 2
2
A
68 70Right-handed 310
Helix 3
3
A
83 85Right-handed 310
Helix 4
4
A
124 127Right-handed 310
Helix 5
5
A
173 175Right-handed 310
Helix 6
6
A
224 226Right-handed 310
Helix 7
7
A
276 278Right-handed 310
Helix 8
8
A
292 297Right-handed alpha
Helix 9
9
A
309 323Right-handed alpha
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There are 6 sheets in PDB entry 1WP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
6 12anti-parallel
Strand 3
A
16 21anti-parallel
Strand 4
A
80 81anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 100first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
135 136anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 152first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
185 186anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 202first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
236 237anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 255first strand
Strand 2
A
208 213anti-parallel
Strand 3
A
217 222anti-parallel
Strand 4
A
288 289anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
299 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il