Analysis of interatomic Contacts of Structural Units in PDB entry:
1WPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1WPL entry

There are 20 chains in PDB entry 1WPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 48	SER 241
B	ARG 48	SER 241
C	ARG 48	SER 241
D	ARG 48	SER 241
E	ARG 48	SER 241
F	ARG 48	SER 241
G	ARG 48	SER 241
H	ARG 48	SER 241
I	ARG 48	SER 241
J	ARG 48	SER 241
K	MET 1	GLU 84
L	MET 1	GLU 84
M	MET 1	GLU 84
N	MET 1	GLU 84
O	MET 1	GLU 84
P	MET 1	GLU 84
Q	MET 1	GLU 84
R	MET 1	GLU 84
S	MET 1	GLU 84
T	MET 1	GLU 84

There are120 helices in PDB entry 1WPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	51	73	Right-handed alpha
Helix 2	2	A	79	83	Right-handed 310
Helix 3	3	A	84	97	Right-handed alpha
Helix 4	4	A	98	102	Right-handed 310
Helix 5	5	A	103	108	Right-handed alpha
Helix 6	6	A	155	168	Right-handed alpha
Helix 7	7	A	172	189	Right-handed alpha
Helix 8	8	A	202	206	Right-handed alpha
Helix 9	9	A	224	228	Right-handed alpha
Helix 10	10	A	228	239	Right-handed alpha
Helix 11	11	B	51	73	Right-handed alpha
Helix 12	12	B	79	83	Right-handed 310
Helix 13	13	B	84	97	Right-handed alpha
Helix 14	14	B	98	102	Right-handed 310
Helix 15	15	B	103	108	Right-handed alpha
Helix 16	16	B	155	168	Right-handed alpha
Helix 17	17	B	172	189	Right-handed alpha
Helix 18	18	B	202	206	Right-handed alpha
Helix 19	19	B	224	228	Right-handed alpha
Helix 20	20	B	228	239	Right-handed alpha
Helix 21	21	C	51	74	Right-handed alpha
Helix 22	22	C	79	83	Right-handed 310
Helix 23	23	C	84	97	Right-handed alpha
Helix 24	24	C	98	102	Right-handed 310
Helix 25	25	C	103	108	Right-handed alpha
Helix 26	26	C	155	168	Right-handed alpha
Helix 27	27	C	172	189	Right-handed alpha
Helix 28	28	C	202	206	Right-handed alpha
Helix 29	29	C	224	228	Right-handed alpha
Helix 30	30	C	228	239	Right-handed alpha
Helix 31	31	D	51	74	Right-handed alpha
Helix 32	32	D	79	83	Right-handed 310
Helix 33	33	D	84	97	Right-handed alpha
Helix 34	34	D	98	102	Right-handed 310
Helix 35	35	D	103	108	Right-handed alpha
Helix 36	36	D	155	168	Right-handed alpha
Helix 37	37	D	172	189	Right-handed alpha
Helix 38	38	D	202	206	Right-handed alpha
Helix 39	39	D	224	228	Right-handed alpha
Helix 40	40	D	228	239	Right-handed alpha
Helix 41	41	E	51	73	Right-handed alpha
Helix 42	42	E	79	83	Right-handed 310
Helix 43	43	E	84	97	Right-handed alpha
Helix 44	44	E	98	102	Right-handed 310
Helix 45	45	E	103	108	Right-handed alpha
Helix 46	46	E	155	168	Right-handed alpha
Helix 47	47	E	172	189	Right-handed alpha
Helix 48	48	E	202	206	Right-handed alpha
Helix 49	49	E	224	228	Right-handed alpha
Helix 50	50	E	228	239	Right-handed alpha
Helix 51	51	F	51	73	Right-handed alpha
Helix 52	52	F	79	83	Right-handed 310
Helix 53	53	F	84	97	Right-handed alpha
Helix 54	54	F	98	102	Right-handed 310
Helix 55	55	F	103	108	Right-handed alpha
Helix 56	56	F	155	168	Right-handed alpha
Helix 57	57	F	172	189	Right-handed alpha
Helix 58	58	F	202	206	Right-handed alpha
Helix 59	59	F	224	228	Right-handed alpha
Helix 60	60	F	228	239	Right-handed alpha
Helix 61	61	G	51	73	Right-handed alpha
Helix 62	62	G	79	83	Right-handed 310
Helix 63	63	G	84	97	Right-handed alpha
Helix 64	64	G	98	102	Right-handed 310
Helix 65	65	G	103	108	Right-handed alpha
Helix 66	66	G	155	168	Right-handed alpha
Helix 67	67	G	172	189	Right-handed alpha
Helix 68	68	G	202	206	Right-handed alpha
Helix 69	69	G	224	228	Right-handed alpha
Helix 70	70	G	228	239	Right-handed alpha
Helix 71	71	H	51	73	Right-handed alpha
Helix 72	72	H	79	83	Right-handed 310
Helix 73	73	H	84	97	Right-handed alpha
Helix 74	74	H	98	102	Right-handed 310
Helix 75	75	H	103	108	Right-handed alpha
Helix 76	76	H	155	168	Right-handed alpha
Helix 77	77	H	172	189	Right-handed alpha
Helix 78	78	H	202	206	Right-handed alpha
Helix 79	79	H	224	228	Right-handed alpha
Helix 80	80	H	228	239	Right-handed alpha
Helix 81	81	I	51	73	Right-handed alpha
Helix 82	82	I	79	83	Right-handed 310
Helix 83	83	I	84	97	Right-handed alpha
Helix 84	84	I	98	102	Right-handed 310
Helix 85	85	I	103	108	Right-handed alpha
Helix 86	86	I	155	168	Right-handed alpha
Helix 87	87	I	172	189	Right-handed alpha
Helix 88	88	I	202	206	Right-handed alpha
Helix 89	89	I	224	228	Right-handed alpha
Helix 90	90	I	228	239	Right-handed alpha
Helix 91	91	J	51	74	Right-handed alpha
Helix 92	92	J	79	83	Right-handed 310
Helix 93	93	J	84	97	Right-handed alpha
Helix 94	94	J	98	102	Right-handed 310
Helix 95	95	J	103	108	Right-handed alpha
Helix 96	96	J	155	168	Right-handed alpha
Helix 97	97	J	172	189	Right-handed alpha
Helix 98	98	J	202	206	Right-handed alpha
Helix 99	99	J	224	228	Right-handed alpha
Helix 100	100	J	228	239	Right-handed alpha
Helix 101	101	K	25	33	Right-handed alpha
Helix 102	102	K	52	63	Right-handed alpha
Helix 103	103	L	25	33	Right-handed alpha
Helix 104	104	L	52	63	Right-handed alpha
Helix 105	105	M	25	33	Right-handed alpha
Helix 106	106	M	52	63	Right-handed alpha
Helix 107	107	N	25	33	Right-handed alpha
Helix 108	108	N	52	63	Right-handed alpha
Helix 109	109	O	25	33	Right-handed alpha
Helix 110	110	O	52	63	Right-handed alpha
Helix 111	111	P	25	33	Right-handed alpha
Helix 112	112	P	52	63	Right-handed alpha
Helix 113	113	Q	25	33	Right-handed alpha
Helix 114	114	Q	52	63	Right-handed alpha
Helix 115	115	R	25	33	Right-handed alpha
Helix 116	116	R	52	63	Right-handed alpha
Helix 117	117	S	25	33	Right-handed alpha
Helix 118	118	S	52	63	Right-handed alpha
Helix 119	119	T	25	33	Right-handed alpha
Helix 120	120	T	52	63	Right-handed alpha

There are 22 sheets in PDB entry 1WPL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	152	153	anti-parallel

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There are 30 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	120	132	parallel
Strand 3	E	215	223	anti-parallel
Strand 4	E	192	201	anti-parallel
Strand 5	E	138	148	anti-parallel
Strand 6	E	120	132	anti-parallel
Strand 7	E	170	171	parallel
Strand 8	E	120	132	parallel
Strand 9	D	215	223	anti-parallel
Strand 10	D	192	201	anti-parallel
Strand 11	D	138	148	anti-parallel
Strand 12	D	120	132	anti-parallel
Strand 13	D	170	171	parallel
Strand 14	D	120	132	parallel
Strand 15	C	215	223	anti-parallel
Strand 16	C	192	201	anti-parallel
Strand 17	C	138	148	anti-parallel
Strand 18	C	120	132	anti-parallel
Strand 19	C	170	171	parallel
Strand 20	C	120	132	parallel
Strand 21	B	215	223	anti-parallel
Strand 22	B	192	201	anti-parallel
Strand 23	B	138	148	anti-parallel
Strand 24	B	120	132	anti-parallel
Strand 25	B	170	171	parallel
Strand 26	B	120	132	parallel
Strand 27	A	215	223	anti-parallel
Strand 28	A	192	201	anti-parallel
Strand 29	A	138	148	anti-parallel
Strand 30	A	120	132	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	152	153	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	152	153	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	152	153	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	152	153	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	113	first strand
Strand 2	F	152	153	anti-parallel

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There are 30 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	120	132	parallel
Strand 3	J	215	223	anti-parallel
Strand 4	J	192	201	anti-parallel
Strand 5	J	138	148	anti-parallel
Strand 6	J	120	132	anti-parallel
Strand 7	J	170	171	parallel
Strand 8	J	120	132	parallel
Strand 9	I	215	223	anti-parallel
Strand 10	I	192	201	anti-parallel
Strand 11	I	138	148	anti-parallel
Strand 12	I	120	132	anti-parallel
Strand 13	I	170	171	parallel
Strand 14	I	120	132	parallel
Strand 15	H	215	223	anti-parallel
Strand 16	H	192	201	anti-parallel
Strand 17	H	138	148	anti-parallel
Strand 18	H	120	132	anti-parallel
Strand 19	H	170	171	parallel
Strand 20	H	120	132	parallel
Strand 21	G	215	223	anti-parallel
Strand 22	G	192	201	anti-parallel
Strand 23	G	138	148	anti-parallel
Strand 24	G	120	132	anti-parallel
Strand 25	G	170	171	parallel
Strand 26	G	120	132	parallel
Strand 27	F	215	223	anti-parallel
Strand 28	F	192	201	anti-parallel
Strand 29	F	138	148	anti-parallel
Strand 30	F	120	132	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	113	first strand
Strand 2	G	152	154	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	113	first strand
Strand 2	H	152	154	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	111	113	first strand
Strand 2	I	152	154	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	111	113	first strand
Strand 2	J	152	154	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	37	first strand
Strand 2	K	46	49	anti-parallel
Strand 3	K	17	20	anti-parallel
Strand 4	K	3	9	anti-parallel
Strand 5	K	76	83	anti-parallel
Strand 6	K	65	73	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	37	first strand
Strand 2	L	46	49	anti-parallel
Strand 3	L	17	20	anti-parallel
Strand 4	L	3	9	anti-parallel
Strand 5	L	76	83	anti-parallel
Strand 6	L	65	73	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	37	first strand
Strand 2	M	46	49	anti-parallel
Strand 3	M	17	20	anti-parallel
Strand 4	M	3	9	anti-parallel
Strand 5	M	76	83	anti-parallel
Strand 6	M	65	73	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	35	37	first strand
Strand 2	N	46	49	anti-parallel
Strand 3	N	17	20	anti-parallel
Strand 4	N	3	9	anti-parallel
Strand 5	N	76	83	anti-parallel
Strand 6	N	65	73	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	35	37	first strand
Strand 2	O	46	49	anti-parallel
Strand 3	O	17	20	anti-parallel
Strand 4	O	3	9	anti-parallel
Strand 5	O	76	83	anti-parallel
Strand 6	O	65	73	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	35	37	first strand
Strand 2	P	46	49	anti-parallel
Strand 3	P	17	20	anti-parallel
Strand 4	P	3	9	anti-parallel
Strand 5	P	76	83	anti-parallel
Strand 6	P	65	73	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	35	37	first strand
Strand 2	Q	46	49	anti-parallel
Strand 3	Q	17	20	anti-parallel
Strand 4	Q	3	9	anti-parallel
Strand 5	Q	76	83	anti-parallel
Strand 6	Q	65	73	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	35	37	first strand
Strand 2	R	46	49	anti-parallel
Strand 3	R	17	20	anti-parallel
Strand 4	R	3	9	anti-parallel
Strand 5	R	76	83	anti-parallel
Strand 6	R	65	73	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	35	37	first strand
Strand 2	S	46	49	anti-parallel
Strand 3	S	17	20	anti-parallel
Strand 4	S	3	9	anti-parallel
Strand 5	S	76	83	anti-parallel
Strand 6	S	65	73	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	35	37	first strand
Strand 2	T	46	49	anti-parallel
Strand 3	T	17	20	anti-parallel
Strand 4	T	3	9	anti-parallel
Strand 5	T	76	83	anti-parallel
Strand 6	T	65	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1WPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
1WPL