Analysis of interatomic Contacts of Structural Units in PDB entry:
1WPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WPM entry

There are 2 chains in PDB entry 1WPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ALA 308
B
 MET 1ALA 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1WPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 30Right-handed alpha
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
78 82Right-handed 310
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
118 130Right-handed alpha
Helix 6
6
A
135 151Right-handed alpha
Helix 7
7
A
159 174Right-handed alpha
Helix 8
8
A
176 189Right-handed alpha
Helix 9
9
A
195 200Right-handed alpha
Helix 10
10
A
223 229Right-handed alpha
Helix 11
11
A
230 245Right-handed alpha
Helix 12
12
A
272 279Right-handed alpha
Helix 13
13
A
294 299Right-handed alpha
Helix 14
14
A
299 308Right-handed alpha
Helix 15
15
B
13 30Right-handed alpha
Helix 16
16
B
43 53Right-handed alpha
Helix 17
17
B
78 82Right-handed 310
Helix 18
18
B
85 89Right-handed 310
Helix 19
19
B
118 130Right-handed alpha
Helix 20
20
B
135 151Right-handed alpha
Helix 21
21
B
159 174Right-handed alpha
Helix 22
22
B
176 190Right-handed alpha
Helix 23
23
B
195 202Right-handed alpha
Helix 24
24
B
224 229Right-handed alpha
Helix 25
25
B
230 245Right-handed alpha
Helix 26
26
B
271 279Right-handed alpha
Helix 27
27
B
294 299Right-handed alpha
Helix 28
28
B
299 308Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1WPM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
33 38parallel
Strand 3
A
3 7parallel
Strand 4
A
70 74parallel
Strand 5
A
90 96parallel
Strand 6
A
110 113parallel
Strand 7
B
110 113anti-parallel
Strand 8
B
90 96parallel
Strand 9
B
70 74parallel
Strand 10
B
4 7parallel
Strand 11
B
34 38parallel
Strand 12
B
59 60parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
212 221anti-parallel
Strand 3
A
249 256parallel
Strand 4
A
261 267anti-parallel
Strand 5
A
286 289anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
212 221anti-parallel
Strand 3
B
249 256parallel
Strand 4
B
261 267anti-parallel
Strand 5
B
286 289anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il