Analysis of interatomic Contacts of Structural Units in PDB entry:
1WPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WPV entry

There are 3 chains in PDB entry 1WPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ILE 148
B
 THR 2ILE 148
C
 THR 2ILE 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1WPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
25 33Right-handed alpha
Helix 3
3
A
46 61Right-handed alpha
Helix 4
4
A
69 88Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
B
8 19Right-handed alpha
Helix 8
8
B
25 33Right-handed alpha
Helix 9
9
B
46 61Right-handed alpha
Helix 10
10
B
69 88Right-handed alpha
Helix 11
11
B
93 97Right-handed 310
Helix 12
12
B
114 118Right-handed 310
Helix 13
13
C
4 7Right-handed 310
Helix 14
14
C
8 19Right-handed alpha
Helix 15
15
C
25 33Right-handed alpha
Helix 16
16
C
46 61Right-handed alpha
Helix 17
17
C
69 88Right-handed alpha
Helix 18
18
C
93 97Right-handed 310
Helix 19
19
C
114 118Right-handed 310
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There are 3 sheets in PDB entry 1WPV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 44first strand
Strand 2
A
99 109anti-parallel
Strand 3
A
120 130anti-parallel
Strand 4
A
137 147anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 44first strand
Strand 2
B
99 109anti-parallel
Strand 3
B
120 130anti-parallel
Strand 4
B
137 147anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 44first strand
Strand 2
C
99 109anti-parallel
Strand 3
C
120 130anti-parallel
Strand 4
C
137 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il