Analysis of interatomic Contacts of Structural Units in PDB entry:
1WR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WR8 entry

There are 2 chains in PDB entry 1WR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 231
B
 MET 1LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1WR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
46 58Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
105 109Right-handed 310
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
153 166Right-handed alpha
Helix 8
8
A
168 170Right-handed 310
Helix 9
9
A
178 180Right-handed 310
Helix 10
10
A
181 188Right-handed alpha
Helix 11
11
A
198 203Right-handed alpha
Helix 12
12
A
212 228Right-handed alpha
Helix 13
13
B
22 35Right-handed alpha
Helix 14
14
B
46 58Right-handed alpha
Helix 15
15
B
66 68Right-handed 310
Helix 16
16
B
84 97Right-handed alpha
Helix 17
17
B
105 109Right-handed 310
Helix 18
18
B
121 132Right-handed alpha
Helix 19
19
B
153 166Right-handed alpha
Helix 20
20
B
168 170Right-handed 310
Helix 21
21
B
178 180Right-handed 310
Helix 22
22
B
181 188Right-handed alpha
Helix 23
23
B
198 205Right-handed alpha
Helix 24
24
B
212 228Right-handed alpha
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There are 6 sheets in PDB entry 1WR8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
5 9parallel
Strand 3
A
172 176parallel
Strand 4
A
190 193parallel
Strand 5
A
207 208parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
76 79anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
137 140anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
5 9parallel
Strand 3
B
172 176parallel
Strand 4
B
190 193parallel
Strand 5
B
207 208parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
70 73anti-parallel
Strand 3
B
76 79anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
145 148anti-parallel
Strand 3
B
137 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il