Analysis of interatomic Contacts of Structural Units in PDB entry:
1WTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WTD entry

There are 2 chains in PDB entry 1WTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 272
B
 MET 1GLU 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 1WTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 23Right-handed alpha
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
39 47Right-handed alpha
Helix 4
4
A
51 79Right-handed alpha
Helix 5
5
A
79 86Right-handed alpha
Helix 6
6
A
133 150Right-handed alpha
Helix 7
7
A
171 179Right-handed alpha
Helix 8
8
A
200 208Right-handed alpha
Helix 9
9
A
213 230Right-handed alpha
Helix 10
10
A
233 249Right-handed alpha
Helix 11
11
A
250 255Right-handed alpha
Helix 12
12
A
262 272Right-handed alpha
Helix 13
13
B
2 23Right-handed alpha
Helix 14
14
B
26 31Right-handed alpha
Helix 15
15
B
39 47Right-handed alpha
Helix 16
16
B
51 79Right-handed alpha
Helix 17
17
B
79 85Right-handed alpha
Helix 18
18
B
91 98Right-handed alpha
Helix 19
19
B
103 107Right-handed 310
Helix 20
20
B
133 151Right-handed alpha
Helix 21
21
B
152 155Right-handed 310
Helix 22
22
B
170 175Right-handed alpha
Helix 23
23
B
200 208Right-handed alpha
Helix 24
24
B
213 230Right-handed alpha
Helix 25
25
B
231 255Right-handed alpha
Helix 26
26
B
262 271Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1WTD. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
111 114anti-parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
157 162parallel
Strand 5
A
195 199parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
111 114anti-parallel
Strand 3
B
120 123anti-parallel
Strand 4
B
157 159parallel
Strand 5
B
195 196parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il