Analysis of interatomic Contacts of Structural Units in PDB entry:
1WUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WUP entry

There are 4 chains in PDB entry 1WUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4SER 220
B
 LEU 4GLU 219
C
 SER 3GLU 219
D
 SER 3GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1WUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 65Right-handed alpha
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
85 92Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
175 187Right-handed alpha
Helix 6
6
A
203 220Right-handed alpha
Helix 7
7
B
52 67Right-handed alpha
Helix 8
8
B
79 84Right-handed alpha
Helix 9
9
B
85 92Right-handed alpha
Helix 10
10
B
100 109Right-handed alpha
Helix 11
11
B
172 174Right-handed 310
Helix 12
12
B
175 187Right-handed alpha
Helix 13
13
B
203 218Right-handed alpha
Helix 14
14
C
52 66Right-handed alpha
Helix 15
15
C
79 84Right-handed alpha
Helix 16
16
C
85 92Right-handed alpha
Helix 17
17
C
99 108Right-handed alpha
Helix 18
18
C
158 160Right-handed 310
Helix 19
19
C
167 171Right-handed 310
Helix 20
20
C
174 187Right-handed alpha
Helix 21
21
C
203 218Right-handed alpha
Helix 22
22
D
52 65Right-handed alpha
Helix 23
23
D
79 84Right-handed alpha
Helix 24
24
D
85 92Right-handed alpha
Helix 25
25
D
99 110Right-handed alpha
Helix 26
26
D
174 187Right-handed alpha
Helix 27
27
D
203 219Right-handed alpha
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There are 12 sheets in PDB entry 1WUP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
31 34anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
43 47anti-parallel
Strand 5
A
69 74parallel
Strand 6
A
96 97parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
130 133anti-parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
153 157anti-parallel
Strand 5
A
192 195parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
32 34anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
36 39anti-parallel
Strand 4
B
43 47anti-parallel
Strand 5
B
69 74parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
116 118parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
130 133anti-parallel
Strand 3
B
145 148anti-parallel
Strand 4
B
153 157anti-parallel
Strand 5
B
192 195parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 13first strand
Strand 2
C
16 22anti-parallel
Strand 3
C
32 39anti-parallel
Strand 4
C
43 47anti-parallel
Strand 5
C
69 75parallel
Strand 6
C
96 98parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 124first strand
Strand 2
C
131 133anti-parallel
Strand 3
C
145 148anti-parallel
Strand 4
C
153 157anti-parallel
Strand 5
C
192 195parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 13first strand
Strand 2
D
16 23anti-parallel
Strand 3
D
31 34anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 13first strand
Strand 2
D
16 23anti-parallel
Strand 3
D
36 39anti-parallel
Strand 4
D
43 47anti-parallel
Strand 5
D
69 74parallel
Strand 6
D
96 97parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 126first strand
Strand 2
D
130 133anti-parallel
Strand 3
D
145 148anti-parallel
Strand 4
D
153 157anti-parallel
Strand 5
D
192 195parallel
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